1 HAMP#1
154-225 aa · 72 aa · 15.7% of protein
Raw token
HAMP:154:0.000000000000228:225:72:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FYJ45_RS04035
Histidine kinase, Classic
Eisenbergiella porci · GCF_009696275
ClassHKTypeClassicLength458 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_009696275#FYJ45_RS04035Stable P2CS identifier used across views.
GenomeGCF_009696275Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Eisenbergiella
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length458 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage250 / 458 aa (54.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa458 aa
Domain-by-domain annotation3 items
2 HisKA#2
232-295 aa · 64 aa · 14.0% of protein
Raw token
HisKA:232:0.0000000000000202:295:64:643 HATPase_c#3
340-453 aa · 114 aa · 24.9% of protein
Raw token
HATPase_c:340:8.82e-28:453:114:109- Raw architecture: HAMP:154:0.000000000000228:225:72:69#HisKA:232:0.0000000000000202:295:64:64#HATPase_c:340:8.82e-28:453:114:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_009696275::NZ_VUMI01000004.1::G00057
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span170614-172689Genomic interval covered by the local TCS group.
Identifiers
Old locus tagFYJ45_04000RefSeq proteinWP_154463587.1
Context group ID
GCF_009696275::NZ_VUMI01000004.1::G00057Context members
FYJ45_RS04035FYJ45_RS04040
Partner locus tags
FYJ45_RS04035FYJ45_RS04040
Partner old locus tags
FYJ45_04000FYJ45_04005
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_154463587.1Primary protein accession used for annex mappings.
UniProt accessionA0A6N7VWX8Primary UniProt accession resolved in the annex database.
UniProt IDA0A6N7VWX8_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFYJ45_RS04035Primary locus identifier stored in the genes table.
Old locus tagFYJ45_04000Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_VUMI01000004.1Sequence record reported by the local genomic context database.
Genomic interval170 614-171 990 nt1 377 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span170 614-172 689 ntGCF_009696275::NZ_VUMI01000004.1::G00057
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009696275::NZ_VUMI01000004.1::G00057Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_VUMI01000004.1All displayed genes belong to this local TCS context.
Neighborhood span170 614-172 689 nt2 076 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
170 614 nt172 689 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
FYJ45_RS04035GCF_009696275#FYJ45_RS04035
HKClassicCurrent focus
170 614-171 990 nt · Reverse (-)
FYJ45_RS04040GCF_009696275#FYJ45_RS04040
RROmpR
172 018-172 689 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_009696275#FYJ45_RS04035The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1863813
Simplified PFAM architecture for HKOC_1863813
PFAM domain coverage: 233 / 458 aa (50.9%)
1 aa458 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[171-225] | HisKA[231-295] | HATPase_c[340-452]
- Domain count: 3
- Matched identifier: HKOC_1863813
- Positioned domains: HAMP 171-225 ; HisKA 231-295 ; HATPase_c 340-452
Cluster members and taxonomy
Representative gene: GCF_009696275#FYJ45_RS04035
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 652 274 · GCF_009696275
AssemblyASM969627v1 · Contigreference genome · haploid
Genome composition6 105 837 bp · 48,5% GCEisenbergiella porci
Signal transduction countsGenes 176 · HK 86 · RR 83CheA 0 · PP 7
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusEisenbergiella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Eisenbergiella
Related genes
Preview from the same derived genome key