1 HAMP#1
284-352 aa · 69 aa · 12.1% of protein
Raw token
HAMP:284:0.00000000000851:352:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FYJ45_RS01665
Histidine kinase, Classic
Eisenbergiella porci · GCF_009696275
ClassHKTypeClassicLength572 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_009696275#FYJ45_RS01665Stable P2CS identifier used across views.
GenomeGCF_009696275Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Eisenbergiella
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length572 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage254 / 572 aa (44.4%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa572 aa
Domain-by-domain annotation3 items
2 His_kinase#2
367-447 aa · 81 aa · 14.2% of protein
Raw token
His_kinase:367:3.8e-26:447:81:803 HATPase_c#3
469-572 aa · 104 aa · 18.2% of protein
Raw token
HATPase_c:469:0.00000000000367:572:110:109- Raw architecture: HAMP:284:0.00000000000851:352:69:69#His_kinase:367:3.8e-26:447:81:80#HATPase_c:469:0.00000000000367:572:110:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_009696275::NZ_VUMI01000002.1::G00027
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span111904-113622Genomic interval covered by the local TCS group.
Identifiers
Old locus tagFYJ45_01640RefSeq proteinWP_330588484.1
Context group ID
GCF_009696275::NZ_VUMI01000002.1::G00027Context members
FYJ45_RS01665
Partner locus tags
FYJ45_RS01665
Partner old locus tags
FYJ45_01640
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_330588484.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFYJ45_RS01665Primary locus identifier stored in the genes table.
Old locus tagFYJ45_01640Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_VUMI01000002.1Sequence record reported by the local genomic context database.
Genomic interval111 904-113 622 nt1 719 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span111 904-113 622 ntGCF_009696275::NZ_VUMI01000002.1::G00027
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009696275::NZ_VUMI01000002.1::G00027Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_VUMI01000002.1All displayed genes belong to this local TCS context.
Neighborhood span111 904-113 622 nt1 719 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
111 904 nt113 622 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
FYJ45_RS01665GCF_009696275#FYJ45_RS01665
HKClassicCurrent focus
111 904-113 622 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_009696275#FYJ45_RS01665The current gene is the representative for this cluster.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1203796
Simplified PFAM architecture for HKOC_1203796
PFAM domain coverage: 235 / 572 aa (41.1%)
1 aa572 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[301-351] | His_kinase[367-447] | HATPase_c[469-571]
- Domain count: 3
- Matched identifier: HKOC_1203796
- Positioned domains: HAMP 301-351 ; His_kinase 367-447 ; HATPase_c 469-571
Cluster members and taxonomy
Representative gene: GCF_009696275#FYJ45_RS01665
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 652 274 · GCF_009696275
AssemblyASM969627v1 · Contigreference genome · haploid
Genome composition6 105 837 bp · 48,5% GCEisenbergiella porci
Signal transduction countsGenes 176 · HK 86 · RR 83CheA 0 · PP 7
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusEisenbergiella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Eisenbergiella
Related genes
Preview from the same derived genome key