1 HisKA#1
157-220 aa · 64 aa · 16.9% of protein
Raw token
HisKA:157:0.0000000000000197:220:64:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FYJ45_RS00945
Histidine kinase, Classic
Eisenbergiella porci · GCF_009696275
ClassHKTypeClassicLength378 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_009696275#FYJ45_RS00945Stable P2CS identifier used across views.
GenomeGCF_009696275Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Eisenbergiella
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length378 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage173 / 378 aa (45.8%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa378 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
269-377 aa · 109 aa · 28.8% of protein
Raw token
HATPase_c:269:7.35e-27:377:110:109- Raw architecture: HisKA:157:0.0000000000000197:220:64:64#HATPase_c:269:7.35e-27:377:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_009696275::NZ_VUMI01000001.1::G00005
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span200375-201511Genomic interval covered by the local TCS group.
Identifiers
Old locus tagFYJ45_00940RefSeq proteinWP_154463048.1
Context group ID
GCF_009696275::NZ_VUMI01000001.1::G00005Context members
FYJ45_RS00945
Partner locus tags
FYJ45_RS00945
Partner old locus tags
FYJ45_00940
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_154463048.1Primary protein accession used for annex mappings.
UniProt accessionA0A6N7VV95Primary UniProt accession resolved in the annex database.
UniProt IDA0A6N7VV95_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFYJ45_RS00945Primary locus identifier stored in the genes table.
Old locus tagFYJ45_00940Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_VUMI01000001.1Sequence record reported by the local genomic context database.
Genomic interval200 375-201 511 nt1 137 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span200 375-201 511 ntGCF_009696275::NZ_VUMI01000001.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009696275::NZ_VUMI01000001.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_VUMI01000001.1All displayed genes belong to this local TCS context.
Neighborhood span200 375-201 511 nt1 137 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
200 375 nt201 511 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
FYJ45_RS00945GCF_009696275#FYJ45_RS00945
HKClassicCurrent focus
200 375-201 511 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_009696275#FYJ45_RS00945The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2628819
Simplified PFAM architecture for HKOC_2628819
PFAM domain coverage: 172 / 378 aa (45.5%)
1 aa378 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[158-220] | HATPase_c[269-377]
- Domain count: 2
- Matched identifier: HKOC_2628819
- Positioned domains: HisKA 158-220 ; HATPase_c 269-377
Cluster members and taxonomy
Representative gene: GCF_009696275#FYJ45_RS00945
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 652 274 · GCF_009696275
AssemblyASM969627v1 · Contigreference genome · haploid
Genome composition6 105 837 bp · 48,5% GCEisenbergiella porci
Signal transduction countsGenes 176 · HK 86 · RR 83CheA 0 · PP 7
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusEisenbergiella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Eisenbergiella
Related genes
Preview from the same derived genome key