1 HisKA#1
551-616 aa · 66 aa · 7.8% of protein
Raw token
HisKA:551:0.000000000000105:616:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW085_RS15920
Histidine kinase, Classic
Clostridium sp. AF50-3 · GCF_003477445
ClassHKTypeClassicLength847 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003477445#DW085_RS15920Stable P2CS identifier used across views.
GenomeGCF_003477445Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length847 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage167 / 847 aa (19.7%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
662-762 aa · 101 aa · 11.9% of protein
Raw token
HATPase_c:662:0.000000000561:762:105:109- Raw architecture: HisKA:551:0.000000000000105:616:66:64#HATPase_c:662:0.000000000561:762:105:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003477445::NZ_QUDH01000018.1::G00010
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span45741-49025Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW085_15910RefSeq proteinWP_118471600.1
Context group ID
GCF_003477445::NZ_QUDH01000018.1::G00010Context members
DW085_RS15915DW085_RS15920
Partner locus tags
DW085_RS15915DW085_RS15920
Partner old locus tags
DW085_15905DW085_15910
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118471600.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW085_RS15920Primary locus identifier stored in the genes table.
Old locus tagDW085_15910Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUDH01000018.1Sequence record reported by the local genomic context database.
Genomic interval46 482-49 025 nt2 544 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span45 741-49 025 ntGCF_003477445::NZ_QUDH01000018.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003477445::NZ_QUDH01000018.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUDH01000018.1All displayed genes belong to this local TCS context.
Neighborhood span45 741-49 025 nt3 285 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
45 741 nt49 025 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW085_RS15915GCF_003477445#DW085_RS15915
RROmpR
45 741-46 436 nt · Forward (+)
DW085_RS15920GCF_003477445#DW085_RS15920
HKClassicCurrent focus
46 482-49 025 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003477445#DW085_RS15920The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0495331
Simplified PFAM architecture for HKOC_0495331
PFAM domain coverage: 166 / 847 aa (19.6%)
1 aa847 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[551-616] | HATPase_c[663-762]
- Domain count: 2
- Matched identifier: HKOC_0495331
- Positioned domains: HisKA 551-616 ; HATPase_c 663-762
Cluster members and taxonomy
Representative gene: GCF_003477445#DW085_RS15920
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 293 021 · GCF_003477445
AssemblyASM347744v1 · Scaffoldhaploid
Genome composition3 864 962 bp · 48,0% GCClostridium sp. AF50-3
Signal transduction countsGenes 53 · HK 28 · RR 22CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key