1 Response_reg#1
5-127 aa · 123 aa · 50.8% of protein
Raw token
Response_reg:5:2.76e-22:127:123:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW085_RS01255
Response regulator OmpR family
Clostridium sp. AF50-3 · GCF_003477445
ClassRRTypeOmpRLength242 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003477445#DW085_RS01255Stable P2CS identifier used across views.
GenomeGCF_003477445Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length242 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage197 / 242 aa (81.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
161-234 aa · 74 aa · 30.6% of protein
Raw token
Trans_reg_C:161:1.12e-35:234:77:77- Raw architecture: Response_reg:5:2.76e-22:127:123:111#Trans_reg_C:161:1.12e-35:234:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003477445::NZ_QUDH01000001.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span277109-279244Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW085_01255RefSeq proteinWP_118472683.1
Context group ID
GCF_003477445::NZ_QUDH01000001.1::G00001Context members
DW085_RS01255DW085_RS01260
Partner locus tags
DW085_RS01255DW085_RS01260
Partner old locus tags
DW085_01255DW085_01260
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118472683.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW085_RS01255Primary locus identifier stored in the genes table.
Old locus tagDW085_01255Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUDH01000001.1Sequence record reported by the local genomic context database.
Genomic interval277 109-277 837 nt729 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span277 109-279 244 ntGCF_003477445::NZ_QUDH01000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003477445::NZ_QUDH01000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUDH01000001.1All displayed genes belong to this local TCS context.
Neighborhood span277 109-279 244 nt2 136 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
277 109 nt279 244 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW085_RS01255GCF_003477445#DW085_RS01255
RROmpRCurrent focus
277 109-277 837 nt · Forward (+)
DW085_RS01260GCF_003477445#DW085_RS01260
HKClassic
278 309-279 244 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003477445#DW085_RS01255The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0848560
Simplified PFAM architecture for RROC_0848560
PFAM domain coverage: 195 / 242 aa (80.6%)
1 aa242 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-126] | Trans_reg_C[162-234]
- Domain count: 2
- Matched identifier: RROC_0848560
- Positioned domains: Response_reg 5-126 ; Response_reg 5-126 ; Trans_reg_C 162-234 ; Trans_reg_C 162-234
Cluster members and taxonomy
Representative gene: GCF_003477445#DW085_RS01255
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 293 021 · GCF_003477445
AssemblyASM347744v1 · Scaffoldhaploid
Genome composition3 864 962 bp · 48,0% GCClostridium sp. AF50-3
Signal transduction countsGenes 53 · HK 28 · RR 22CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key