1 HAMP#1
61-129 aa · 69 aa · 19.4% of protein
Raw token
HAMP:61:0.0000000000567:129:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW085_RS01435
Histidine kinase, Classic
Clostridium sp. AF50-3 · GCF_003477445
ClassHKTypeClassicLength355 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003477445#DW085_RS01435Stable P2CS identifier used across views.
GenomeGCF_003477445Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length355 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage239 / 355 aa (67.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation3 items
2 HisKA#2
135-198 aa · 64 aa · 18.0% of protein
Raw token
HisKA:135:0.00000000000000456:198:64:643 HATPase_c#3
249-354 aa · 106 aa · 29.9% of protein
Raw token
HATPase_c:249:1.32e-31:354:106:109- Raw architecture: HAMP:61:0.0000000000567:129:69:69#HisKA:135:0.00000000000000456:198:64:64#HATPase_c:249:1.32e-31:354:106:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003477445::NZ_QUDH01000001.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span319087-320828Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW085_01435RefSeq proteinWP_118490833.1
Context group ID
GCF_003477445::NZ_QUDH01000001.1::G00002Context members
DW085_RS01435DW085_RS01440
Partner locus tags
DW085_RS01435DW085_RS01440
Partner old locus tags
DW085_01435DW085_01440
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118490833.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW085_RS01435Primary locus identifier stored in the genes table.
Old locus tagDW085_01435Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUDH01000001.1Sequence record reported by the local genomic context database.
Genomic interval319 087-320 154 nt1 068 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span319 087-320 828 ntGCF_003477445::NZ_QUDH01000001.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003477445::NZ_QUDH01000001.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUDH01000001.1All displayed genes belong to this local TCS context.
Neighborhood span319 087-320 828 nt1 742 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
319 087 nt320 828 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW085_RS01435GCF_003477445#DW085_RS01435
HKClassicCurrent focus
319 087-320 154 nt · Reverse (-)
DW085_RS01440GCF_003477445#DW085_RS01440
RROmpR
320 151-320 828 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003477445#DW085_RS01435The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2776136
Simplified PFAM architecture for HKOC_2776136
PFAM domain coverage: 223 / 355 aa (62.8%)
1 aa355 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[78-129] | HisKA[135-199] | HATPase_c[248-353]
- Domain count: 3
- Matched identifier: HKOC_2776136
- Positioned domains: HAMP 78-129 ; HisKA 135-199 ; HATPase_c 248-353
Cluster members and taxonomy
Representative gene: GCF_003477445#DW085_RS01435
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 293 021 · GCF_003477445
AssemblyASM347744v1 · Scaffoldhaploid
Genome composition3 864 962 bp · 48,0% GCClostridium sp. AF50-3
Signal transduction countsGenes 53 · HK 28 · RR 22CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key