1 HAMP#1
261-332 aa · 72 aa · 12.3% of protein
Raw token
HAMP:261:0.000000000000216:332:72:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW085_RS04610
Histidine kinase, Classic
Clostridium sp. AF50-3 · GCF_003477445
ClassHKTypeClassicLength585 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003477445#DW085_RS04610Stable P2CS identifier used across views.
GenomeGCF_003477445Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length585 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage252 / 585 aa (43.1%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation3 items
2 HisKA#2
357-424 aa · 68 aa · 11.6% of protein
Raw token
HisKA:357:0.00000000000000907:424:68:643 HATPase_c#3
469-580 aa · 112 aa · 19.1% of protein
Raw token
HATPase_c:469:2.44e-20:580:113:109- Raw architecture: HAMP:261:0.000000000000216:332:72:69#HisKA:357:0.00000000000000907:424:68:64#HATPase_c:469:2.44e-20:580:113:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003477445::NZ_QUDH01000003.1::G00013
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span51384-53141Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW085_04600RefSeq proteinWP_118491607.1
Context group ID
GCF_003477445::NZ_QUDH01000003.1::G00013Context members
DW085_RS04610
Partner locus tags
DW085_RS04610
Partner old locus tags
DW085_04600
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118491607.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW085_RS04610Primary locus identifier stored in the genes table.
Old locus tagDW085_04600Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUDH01000003.1Sequence record reported by the local genomic context database.
Genomic interval51 384-53 141 nt1 758 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span51 384-53 141 ntGCF_003477445::NZ_QUDH01000003.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003477445::NZ_QUDH01000003.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUDH01000003.1All displayed genes belong to this local TCS context.
Neighborhood span51 384-53 141 nt1 758 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
51 384 nt53 141 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DW085_RS04610GCF_003477445#DW085_RS04610
HKClassicCurrent focus
51 384-53 141 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003477445#DW085_RS04610The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1137539
Simplified PFAM architecture for HKOC_1137539
PFAM domain coverage: 233 / 585 aa (39.8%)
1 aa585 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[278-331] | HisKA[357-422] | HATPase_c[469-581]
- Domain count: 3
- Matched identifier: HKOC_1137539
- Positioned domains: HAMP 278-331 ; HisKA 357-422 ; HATPase_c 469-581
Cluster members and taxonomy
Representative gene: GCF_003477445#DW085_RS04610
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 293 021 · GCF_003477445
AssemblyASM347744v1 · Scaffoldhaploid
Genome composition3 864 962 bp · 48,0% GCClostridium sp. AF50-3
Signal transduction countsGenes 53 · HK 28 · RR 22CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key