1 Response_reg#1
4-117 aa · 114 aa · 30.7% of protein
Raw token
Response_reg:4:6.9e-27:117:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW085_RS05255
Response regulator, unclassified
Clostridium sp. AF50-3 · GCF_003477445
ClassRRTypeunclassifiedLength371 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003477445#DW085_RS05255Stable P2CS identifier used across views.
GenomeGCF_003477445Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length371 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage193 / 371 aa (52.0%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation3 items
2 HTH_AraC#2
273-315 aa · 43 aa · 11.6% of protein
Raw token
HTH_AraC:273:0.000000000039:315:43:423 HTH_AraC#3
328-363 aa · 36 aa · 9.7% of protein
Raw token
HTH_AraC:328:0.00000103:363:36:42- Raw architecture: Response_reg:4:6.9e-27:117:114:111#HTH_AraC:273:0.000000000039:315:43:42#HTH_AraC:328:0.00000103:363:36:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003477445::NZ_QUDH01000003.1::G00014
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span200243-203142Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW085_05250RefSeq proteinWP_118491663.1
Context group ID
GCF_003477445::NZ_QUDH01000003.1::G00014Context members
DW085_RS05250DW085_RS05255
Partner locus tags
DW085_RS05250DW085_RS05255
Partner old locus tags
DW085_05245DW085_05250
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118491663.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW085_RS05255Primary locus identifier stored in the genes table.
Old locus tagDW085_05250Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUDH01000003.1Sequence record reported by the local genomic context database.
Genomic interval202 027-203 142 nt1 116 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span200 243-203 142 ntGCF_003477445::NZ_QUDH01000003.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003477445::NZ_QUDH01000003.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUDH01000003.1All displayed genes belong to this local TCS context.
Neighborhood span200 243-203 142 nt2 900 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
200 243 nt203 142 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW085_RS05250GCF_003477445#DW085_RS05250
HKClassic
200 243-201 832 nt · Reverse (-)
DW085_RS05255GCF_003477445#DW085_RS05255
RRunclassifiedCurrent focus
202 027-203 142 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003477445#DW085_RS05255The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0439365
Simplified PFAM architecture for RROC_0439365
PFAM domain coverage: 192 / 371 aa (51.8%)
1 aa371 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-116] | HTH_18[287-365]
- Domain count: 2
- Matched identifier: RROC_0439365
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; HTH_18 287-365 ; HTH_18 287-365
Cluster members and taxonomy
Representative gene: GCF_003477445#DW085_RS05255
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 293 021 · GCF_003477445
AssemblyASM347744v1 · Scaffoldhaploid
Genome composition3 864 962 bp · 48,0% GCClostridium sp. AF50-3
Signal transduction countsGenes 53 · HK 28 · RR 22CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key