1 HAMP#1
235-303 aa · 69 aa · 13.0% of protein
Raw token
HAMP:235:0.00000000000000139:303:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW085_RS05250
Histidine kinase, Classic
Clostridium sp. AF50-3 · GCF_003477445
ClassHKTypeClassicLength529 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003477445#DW085_RS05250Stable P2CS identifier used across views.
GenomeGCF_003477445Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length529 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage260 / 529 aa (49.1%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation3 items
2 His_kinase#2
318-397 aa · 80 aa · 15.1% of protein
Raw token
His_kinase:318:1.87e-31:397:80:803 HATPase_c#3
413-523 aa · 111 aa · 21.0% of protein
Raw token
HATPase_c:413:0.000000000000903:523:111:109- Raw architecture: HAMP:235:0.00000000000000139:303:69:69#His_kinase:318:1.87e-31:397:80:80#HATPase_c:413:0.000000000000903:523:111:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003477445::NZ_QUDH01000003.1::G00014
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span200243-203142Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW085_05245RefSeq proteinWP_118481905.1
Context group ID
GCF_003477445::NZ_QUDH01000003.1::G00014Context members
DW085_RS05250DW085_RS05255
Partner locus tags
DW085_RS05250DW085_RS05255
Partner old locus tags
DW085_05245DW085_05250
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118481905.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW085_RS05250Primary locus identifier stored in the genes table.
Old locus tagDW085_05245Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUDH01000003.1Sequence record reported by the local genomic context database.
Genomic interval200 243-201 832 nt1 590 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span200 243-203 142 ntGCF_003477445::NZ_QUDH01000003.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003477445::NZ_QUDH01000003.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUDH01000003.1All displayed genes belong to this local TCS context.
Neighborhood span200 243-203 142 nt2 900 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
200 243 nt203 142 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW085_RS05250GCF_003477445#DW085_RS05250
HKClassicCurrent focus
200 243-201 832 nt · Reverse (-)
DW085_RS05255GCF_003477445#DW085_RS05255
RRunclassified
202 027-203 142 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003477445#DW085_RS05250The current gene is the representative for this cluster.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1360507
Simplified PFAM architecture for HKOC_1360507
PFAM domain coverage: 239 / 529 aa (45.2%)
1 aa529 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[252-302] | His_kinase[319-395] | HATPase_c[413-523]
- Domain count: 3
- Matched identifier: HKOC_1360507
- Positioned domains: HAMP 252-302 ; His_kinase 319-395 ; HATPase_c 413-523
Cluster members and taxonomy
Representative gene: GCF_003477445#DW085_RS05250
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 293 021 · GCF_003477445
AssemblyASM347744v1 · Scaffoldhaploid
Genome composition3 864 962 bp · 48,0% GCClostridium sp. AF50-3
Signal transduction countsGenes 53 · HK 28 · RR 22CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key