1 HAMP#1
87-156 aa · 70 aa · 18.3% of protein
Raw token
HAMP:87:0.000000000169:156:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CLFS41_RS04785
Histidine kinase, Classic
Clostridium sp. FS41 · GCF_000954015
ClassHKTypeClassicLength383 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000954015#CLFS41_RS04785Stable P2CS identifier used across views.
GenomeGCF_000954015Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length383 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage250 / 383 aa (65.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa383 aa
Domain-by-domain annotation3 items
2 HisKA#2
160-226 aa · 67 aa · 17.5% of protein
Raw token
HisKA:160:0.00000000000356:226:67:643 HATPase_c#3
267-379 aa · 113 aa · 29.5% of protein
Raw token
HATPase_c:267:7.48e-30:379:113:109- Raw architecture: HAMP:87:0.000000000169:156:70:69#HisKA:160:0.00000000000356:226:67:64#HATPase_c:267:7.48e-30:379:113:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000954015::NZ_JYHN01000034.1::G00011
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span3477-5302Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCLFS41_09600RefSeq proteinWP_045091628.1
Context group ID
GCF_000954015::NZ_JYHN01000034.1::G00011Context members
CLFS41_RS04785CLFS41_RS04790
Partner locus tags
CLFS41_RS04785CLFS41_RS04790
Partner old locus tags
CLFS41_09600CLFS41_09610
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_045091628.1Primary protein accession used for annex mappings.
UniProt accessionA0A0J9BBU9Primary UniProt accession resolved in the annex database.
UniProt IDA0A0J9BBU9_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCLFS41_RS04785Primary locus identifier stored in the genes table.
Old locus tagCLFS41_09600Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JYHN01000034.1Sequence record reported by the local genomic context database.
Genomic interval3 477-4 628 nt1 152 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span3 477-5 302 ntGCF_000954015::NZ_JYHN01000034.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000954015::NZ_JYHN01000034.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JYHN01000034.1All displayed genes belong to this local TCS context.
Neighborhood span3 477-5 302 nt1 826 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 477 nt5 302 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CLFS41_RS04785GCF_000954015#CLFS41_RS04785
HKClassicCurrent focus
3 477-4 628 nt · Reverse (-)
CLFS41_RS04790GCF_000954015#CLFS41_RS04790
RROmpR
4 625-5 302 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000954015#CLFS41_RS04785The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2582644
Simplified PFAM architecture for HKOC_2582644
PFAM domain coverage: 228 / 383 aa (59.5%)
1 aa383 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[103-155] | HisKA[160-225] | HATPase_c[270-378]
- Domain count: 3
- Matched identifier: HKOC_2582644
- Positioned domains: HAMP 103-155 ; HisKA 160-225 ; HATPase_c 270-378
Cluster members and taxonomy
Representative gene: GCF_000954015#CLFS41_RS04785
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 609 975 · GCF_000954015
AssemblyASM95401v1 · Contighaploid
Genome composition6 265 866 bp · 49,5% GCClostridium sp. FS41
Signal transduction countsGenes 174 · HK 90 · RR 82CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key