1 PAS_3#1
38-118 aa · 81 aa · 5.7% of protein
Raw token
PAS_3:38:0.00000000194:118:84:89P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CLFS41_RS02065
Histidine kinase, Hybrid
Clostridium sp. FS41 · GCF_000954015
ClassHKTypeHybridLength1426 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000954015#CLFS41_RS02065Stable P2CS identifier used across views.
GenomeGCF_000954015Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
PAS_3HisKAHATPase_cResponse_reg
Protein length1426 aaLength used to scale native and Biotite-like views.
Annotated domains77 with usable coordinates.
Domain coverage626 / 1426 aa (43.9%)Merged over positioned domains only.
Domain description4 PAS_3,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa1426 aa
Domain-by-domain annotation7 items
2 PAS_3#2
168-250 aa · 83 aa · 5.8% of protein
Raw token
PAS_3:168:0.00000000045:250:83:893 PAS_3#3
293-379 aa · 87 aa · 6.1% of protein
Raw token
PAS_3:293:0.000000000000281:379:87:894 PAS_3#4
533-613 aa · 81 aa · 5.7% of protein
Raw token
PAS_3:533:0.0000000102:613:81:895 HisKA#5
1045-1110 aa · 66 aa · 4.6% of protein
Raw token
HisKA:1045:3.97e-18:1110:66:646 HATPase_c#6
1158-1269 aa · 112 aa · 7.9% of protein
Raw token
HATPase_c:1158:1.23e-29:1269:114:1097 Response_reg#7
1303-1418 aa · 116 aa · 8.1% of protein
Raw token
Response_reg:1303:1.69e-25:1418:116:111- Raw architecture: PAS_3:38:0.00000000194:118:84:89#PAS_3:168:0.00000000045:250:83:89#PAS_3:293:0.000000000000281:379:87:89#PAS_3:533:0.0000000102:613:81:89#HisKA:1045:3.97e-18:1110:66:64#HATPase_c:1158:1.23e-29:1269:114:109#Response_reg:1303:1.69e-25:1418:116:111
- Domain description: 4 PAS_3,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000954015::NZ_JYHN01000017.1::G00005
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span1859-6139Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCLFS41_04080RefSeq proteinWP_045091315.1
Context group ID
GCF_000954015::NZ_JYHN01000017.1::G00005Context members
CLFS41_RS02065
Partner locus tags
CLFS41_RS02065
Partner old locus tags
CLFS41_04080
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_045091315.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCLFS41_RS02065Primary locus identifier stored in the genes table.
Old locus tagCLFS41_04080Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JYHN01000017.1Sequence record reported by the local genomic context database.
Genomic interval1 859-6 139 nt4 281 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 859-6 139 ntGCF_000954015::NZ_JYHN01000017.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000954015::NZ_JYHN01000017.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JYHN01000017.1All displayed genes belong to this local TCS context.
Neighborhood span1 859-6 139 nt4 281 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 859 nt6 139 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CLFS41_RS02065GCF_000954015#CLFS41_RS02065
HKHybridCurrent focus
1 859-6 139 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000954015#CLFS41_RS02065The current gene is the representative for this cluster.
PFAM architecturePAS_3 + PAS_3 + PAS_3 + PAS_3 + HisKA + HATPase_c + Response_reg7 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0060530
Simplified PFAM architecture for HKOC_0060530
PFAM domain coverage: 613 / 1426 aa (43.0%)
1 aa1426 aa
PAS_3PAS_3PAS_3PAS_3HisKAHATPase_cResponse_reg
- Simplified architecture: PAS_3 + PAS_3 + PAS_3 + PAS_3 + HisKA + HATPase_c + Response_reg
- Raw architecture: PAS_3[38-119] | PAS_3[168-248] | PAS_3[293-366] | PAS_3[534-615] | HisKA[1045-1110] | HATPase_c[1158-1270] | Response_reg[1303-1417]
- Domain count: 7
- Matched identifier: HKOC_0060530
- Positioned domains: PAS_3 38-119 ; PAS_3 168-248 ; PAS_3 293-366 ; PAS_3 534-615 ; HisKA 1045-1110 ; HATPase_c 1158-1270 ; Response_reg 1303-1417
Cluster members and taxonomy
Representative gene: GCF_000954015#CLFS41_RS02065
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 609 975 · GCF_000954015
AssemblyASM95401v1 · Contighaploid
Genome composition6 265 866 bp · 49,5% GCClostridium sp. FS41
Signal transduction countsGenes 174 · HK 90 · RR 82CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key