1 HisKA#1
544-609 aa · 66 aa · 8.1% of protein
Raw token
HisKA:544:0.0000000000000328:609:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CLFS41_RS00590
Histidine kinase, Classic
Clostridium sp. FS41 · GCF_000954015
ClassHKTypeClassicLength819 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000954015#CLFS41_RS00590Stable P2CS identifier used across views.
GenomeGCF_000954015Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length819 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage159 / 819 aa (19.4%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa819 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
655-747 aa · 93 aa · 11.4% of protein
Raw token
HATPase_c:655:0.0000000000000439:747:97:109- Raw architecture: HisKA:544:0.0000000000000328:609:66:64#HATPase_c:655:0.0000000000000439:747:97:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000954015::NZ_JYHN01000006.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span51708-54871Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCLFS41_01110RefSeq proteinWP_045091125.1
Context group ID
GCF_000954015::NZ_JYHN01000006.1::G00002Context members
CLFS41_RS00585CLFS41_RS00590
Partner locus tags
CLFS41_RS00585CLFS41_RS00590
Partner old locus tags
CLFS41_01100CLFS41_01110
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_045091125.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCLFS41_RS00590Primary locus identifier stored in the genes table.
Old locus tagCLFS41_01110Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JYHN01000006.1Sequence record reported by the local genomic context database.
Genomic interval52 412-54 871 nt2 460 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span51 708-54 871 ntGCF_000954015::NZ_JYHN01000006.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000954015::NZ_JYHN01000006.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JYHN01000006.1All displayed genes belong to this local TCS context.
Neighborhood span51 708-54 871 nt3 164 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
51 708 nt54 871 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CLFS41_RS00585GCF_000954015#CLFS41_RS00585
RROmpR
51 708-52 403 nt · Forward (+)
CLFS41_RS00590GCF_000954015#CLFS41_RS00590
HKClassicCurrent focus
52 412-54 871 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000954015#CLFS41_RS00590The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0530798
Simplified PFAM architecture for HKOC_0530798
PFAM domain coverage: 158 / 819 aa (19.3%)
1 aa819 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[544-609] | HATPase_c[656-747]
- Domain count: 2
- Matched identifier: HKOC_0530798
- Positioned domains: HisKA 544-609 ; HATPase_c 656-747
Cluster members and taxonomy
Representative gene: GCF_000954015#CLFS41_RS00590
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 609 975 · GCF_000954015
AssemblyASM95401v1 · Contighaploid
Genome composition6 265 866 bp · 49,5% GCClostridium sp. FS41
Signal transduction countsGenes 174 · HK 90 · RR 82CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key