1 Response_reg#1
5-116 aa · 112 aa · 25.8% of protein
Raw token
Response_reg:5:6.51e-26:116:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CLFS41_RS01105
Response regulator, unclassified
Clostridium sp. FS41 · GCF_000954015
ClassRRTypeunclassifiedLength434 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000954015#CLFS41_RS01105Stable P2CS identifier used across views.
GenomeGCF_000954015Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length434 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage187 / 434 aa (43.1%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa434 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
343-379 aa · 37 aa · 8.5% of protein
Raw token
HTH_AraC:343:0.0000000579:379:37:423 HTH_AraC#3
393-430 aa · 38 aa · 8.8% of protein
Raw token
HTH_AraC:393:0.00000000638:430:38:42- Raw architecture: Response_reg:5:6.51e-26:116:112:111#HTH_AraC:343:0.0000000579:379:37:42#HTH_AraC:393:0.00000000638:430:38:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000954015::NZ_JYHN01000006.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span165477-168561Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCLFS41_02150RefSeq proteinWP_045091177.1
Context group ID
GCF_000954015::NZ_JYHN01000006.1::G00003Context members
CLFS41_RS01100CLFS41_RS01105
Partner locus tags
CLFS41_RS01100CLFS41_RS01105
Partner old locus tags
CLFS41_02140CLFS41_02150
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_045091177.1Primary protein accession used for annex mappings.
UniProt accessionA0AA41K4G3Primary UniProt accession resolved in the annex database.
UniProt IDA0AA41K4G3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCLFS41_RS01105Primary locus identifier stored in the genes table.
Old locus tagCLFS41_02150Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JYHN01000006.1Sequence record reported by the local genomic context database.
Genomic interval167 257-168 561 nt1 305 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span165 477-168 561 ntGCF_000954015::NZ_JYHN01000006.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000954015::NZ_JYHN01000006.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JYHN01000006.1All displayed genes belong to this local TCS context.
Neighborhood span165 477-168 561 nt3 085 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
165 477 nt168 561 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CLFS41_RS01100GCF_000954015#CLFS41_RS01100
HKClassic
165 477-167 282 nt · Forward (+)
CLFS41_RS01105GCF_000954015#CLFS41_RS01105
RRunclassifiedCurrent focus
167 257-168 561 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000954015#CLFS41_RS01105The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GGDEF_2 + HTH_183 domains in the representative PFAM annotation.
PFAM architecture for RROC_0340983
Simplified PFAM architecture for RROC_0340983
PFAM domain coverage: 331 / 434 aa (76.3%)
1 aa434 aa
Response_regGGDEF_2HTH_18
- Simplified architecture: Response_reg + GGDEF_2 + HTH_18
- Raw architecture: Response_reg[5-116] | GGDEF_2[157-295] | HTH_18[352-431]
- Domain count: 3
- Matched identifier: RROC_0340983
- Positioned domains: Response_reg 5-116 ; Response_reg 5-116 ; GGDEF_2 157-295 ; GGDEF_2 157-295 ; HTH_18 352-431 ; HTH_18 352-431
Cluster members and taxonomy
Representative gene: GCF_000954015#CLFS41_RS01105
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 609 975 · GCF_000954015
AssemblyASM95401v1 · Contighaploid
Genome composition6 265 866 bp · 49,5% GCClostridium sp. FS41
Signal transduction countsGenes 174 · HK 90 · RR 82CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key