1 Response_reg#1
7-114 aa · 108 aa · 39.6% of protein
Raw token
Response_reg:7:1.98e-26:114:108:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CLFS41_RS01925
Response regulator, unclassified
Clostridium sp. FS41 · GCF_000954015
ClassRRTypeunclassifiedLength273 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000954015#CLFS41_RS01925Stable P2CS identifier used across views.
GenomeGCF_000954015Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length273 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage191 / 273 aa (70.0%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa273 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
175-216 aa · 42 aa · 15.4% of protein
Raw token
HTH_AraC:175:0.0000202:216:42:423 HTH_AraC#3
224-264 aa · 41 aa · 15.0% of protein
Raw token
HTH_AraC:224:0.000000000288:264:41:42- Raw architecture: Response_reg:7:1.98e-26:114:108:111#HTH_AraC:175:0.0000202:216:42:42#HTH_AraC:224:0.000000000288:264:41:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000954015::NZ_JYHN01000013.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span24472-27041Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCLFS41_03820RefSeq proteinWP_007858930.1
Context group ID
GCF_000954015::NZ_JYHN01000013.1::G00004Context members
CLFS41_RS01920CLFS41_RS01925
Partner locus tags
CLFS41_RS01920CLFS41_RS01925
Partner old locus tags
CLFS41_03810CLFS41_03820
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_007858930.1Primary protein accession used for annex mappings.
UniProt accessionG5HD84Primary UniProt accession resolved in the annex database.
UniProt IDG5HD84_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCLFS41_RS01925Primary locus identifier stored in the genes table.
Old locus tagCLFS41_03820Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JYHN01000013.1Sequence record reported by the local genomic context database.
Genomic interval26 220-27 041 nt822 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span24 472-27 041 ntGCF_000954015::NZ_JYHN01000013.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000954015::NZ_JYHN01000013.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JYHN01000013.1All displayed genes belong to this local TCS context.
Neighborhood span24 472-27 041 nt2 570 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
24 472 nt27 041 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CLFS41_RS01920GCF_000954015#CLFS41_RS01920
HKClassic
24 472-26 223 nt · Reverse (-)
CLFS41_RS01925GCF_000954015#CLFS41_RS01925
RRunclassifiedCurrent focus
26 220-27 041 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000233455#HMPREF9469_RS02715Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0608215
Simplified PFAM architecture for RROC_0608215
PFAM domain coverage: 187 / 273 aa (68.5%)
1 aa273 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[7-115] | HTH_18[189-266]
- Domain count: 2
- Matched identifier: RROC_0608215
- Positioned domains: Response_reg 7-115 ; Response_reg 7-115 ; HTH_18 189-266 ; HTH_18 189-266
Cluster members and taxonomy
Representative gene: GCF_000233455#HMPREF9469_RS02715
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 609 975 · GCF_000954015
AssemblyASM95401v1 · Contighaploid
Genome composition6 265 866 bp · 49,5% GCClostridium sp. FS41
Signal transduction countsGenes 174 · HK 90 · RR 82CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key