1 dCache_1#1
183-277 aa · 95 aa · 16.3% of protein
Raw token
dCache_1:183:0.0000639:277:98:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CLFS41_RS01920
Histidine kinase, Classic
Clostridium sp. FS41 · GCF_000954015
ClassHKTypeClassicLength583 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000954015#CLFS41_RS01920Stable P2CS identifier used across views.
GenomeGCF_000954015Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
dCache_1HAMPHis_kinaseHATPase_c
Protein length583 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage355 / 583 aa (60.9%)Merged over positioned domains only.
Domain description1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa583 aa
Domain-by-domain annotation4 items
2 HAMP#2
296-365 aa · 70 aa · 12.0% of protein
Raw token
HAMP:296:0.000000000000444:365:70:693 His_kinase#3
380-458 aa · 79 aa · 13.6% of protein
Raw token
His_kinase:380:2.13e-29:458:80:804 HATPase_c#4
470-580 aa · 111 aa · 19.0% of protein
Raw token
HATPase_c:470:0.000000000579:580:115:109- Raw architecture: dCache_1:183:0.0000639:277:98:195#HAMP:296:0.000000000000444:365:70:69#His_kinase:380:2.13e-29:458:80:80#HATPase_c:470:0.000000000579:580:115:109
- Domain description: 1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000954015::NZ_JYHN01000013.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span24472-27041Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCLFS41_03810RefSeq proteinWP_045091295.1
Context group ID
GCF_000954015::NZ_JYHN01000013.1::G00004Context members
CLFS41_RS01920CLFS41_RS01925
Partner locus tags
CLFS41_RS01920CLFS41_RS01925
Partner old locus tags
CLFS41_03810CLFS41_03820
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_045091295.1Primary protein accession used for annex mappings.
UniProt accessionA0A0J9BZR7Primary UniProt accession resolved in the annex database.
UniProt IDA0A0J9BZR7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCLFS41_RS01920Primary locus identifier stored in the genes table.
Old locus tagCLFS41_03810Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JYHN01000013.1Sequence record reported by the local genomic context database.
Genomic interval24 472-26 223 nt1 752 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span24 472-27 041 ntGCF_000954015::NZ_JYHN01000013.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000954015::NZ_JYHN01000013.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JYHN01000013.1All displayed genes belong to this local TCS context.
Neighborhood span24 472-27 041 nt2 570 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
24 472 nt27 041 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CLFS41_RS01920GCF_000954015#CLFS41_RS01920
HKClassicCurrent focus
24 472-26 223 nt · Reverse (-)
CLFS41_RS01925GCF_000954015#CLFS41_RS01925
RRunclassified
26 220-27 041 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000954015#CLFS41_RS01920The current gene is the representative for this cluster.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1147667
Simplified PFAM architecture for HKOC_1147667
PFAM domain coverage: 233 / 583 aa (40.0%)
1 aa583 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[314-360] | His_kinase[380-458] | HATPase_c[475-581]
- Domain count: 3
- Matched identifier: HKOC_1147667
- Positioned domains: HAMP 314-360 ; His_kinase 380-458 ; HATPase_c 475-581
Cluster members and taxonomy
Representative gene: GCF_000954015#CLFS41_RS01920
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 609 975 · GCF_000954015
AssemblyASM95401v1 · Contighaploid
Genome composition6 265 866 bp · 49,5% GCClostridium sp. FS41
Signal transduction countsGenes 174 · HK 90 · RR 82CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key