1 Response_reg#1
7-120 aa · 114 aa · 15.6% of protein
Raw token
Response_reg:7:2.55e-29:120:115:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CLFS41_RS02080
Response regulator, PleD_VieA family
Clostridium sp. FS41 · GCF_000954015
ClassRRTypePleD_VieALength733 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000954015#CLFS41_RS02080Stable P2CS identifier used across views.
GenomeGCF_000954015Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
Response_regGGDEFEAL
Protein length733 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage526 / 733 aa (71.8%)Merged over positioned domains only.
Domain description2 Response_reg,1 GGDEF,1 EALSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa733 aa
Domain-by-domain annotation4 items
2 GGDEF#2
137-217 aa · 81 aa · 11.1% of protein
Raw token
GGDEF:137:4.09e-16:217:83:1603 EAL#3
309-539 aa · 231 aa · 31.5% of protein
Raw token
EAL:309:1.36e-75:539:231:2354 Response_reg#4
574-673 aa · 100 aa · 13.6% of protein
Raw token
Response_reg:574:0.00000000000000241:673:102:111- Raw architecture: Response_reg:7:2.55e-29:120:115:111#GGDEF:137:4.09e-16:217:83:160#EAL:309:1.36e-75:539:231:235#Response_reg:574:0.00000000000000241:673:102:111
- Domain description: 2 Response_reg,1 GGDEF,1 EAL
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000954015::NZ_JYHN01000017.1::G00006
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span10092-12293Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCLFS41_04120RefSeq proteinWP_045091317.1
Context group ID
GCF_000954015::NZ_JYHN01000017.1::G00006Context members
CLFS41_RS02080
Partner locus tags
CLFS41_RS02080
Partner old locus tags
CLFS41_04120
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_045091317.1Primary protein accession used for annex mappings.
UniProt accessionA0A0J9BWI1Primary UniProt accession resolved in the annex database.
UniProt IDA0A0J9BWI1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCLFS41_RS02080Primary locus identifier stored in the genes table.
Old locus tagCLFS41_04120Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JYHN01000017.1Sequence record reported by the local genomic context database.
Genomic interval10 092-12 293 nt2 202 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span10 092-12 293 ntGCF_000954015::NZ_JYHN01000017.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000954015::NZ_JYHN01000017.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JYHN01000017.1All displayed genes belong to this local TCS context.
Neighborhood span10 092-12 293 nt2 202 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
10 092 nt12 293 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CLFS41_RS02080GCF_000954015#CLFS41_RS02080
RRPleD_VieACurrent focus
10 092-12 293 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000954015#CLFS41_RS02080The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GGDEF + EAL + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for RROC_0022807
Simplified PFAM architecture for RROC_0022807
PFAM domain coverage: 598 / 733 aa (81.6%)
1 aa733 aa
Response_regGGDEFEALResponse_reg
- Simplified architecture: Response_reg + GGDEF + EAL + Response_reg
- Raw architecture: Response_reg[7-119] | GGDEF[136-275] | EAL[305-539] | Response_reg[574-683]
- Domain count: 4
- Matched identifier: RROC_0022807
- Positioned domains: Response_reg 7-119 ; Response_reg 7-119 ; GGDEF 136-275 ; GGDEF 136-275 ; EAL 305-539 ; EAL 305-539 ; Response_reg 574-683 ; Response_reg 574-683
Cluster members and taxonomy
Representative gene: GCF_000954015#CLFS41_RS02080
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 609 975 · GCF_000954015
AssemblyASM95401v1 · Contighaploid
Genome composition6 265 866 bp · 49,5% GCClostridium sp. FS41
Signal transduction countsGenes 174 · HK 90 · RR 82CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key