1 Response_reg#1
135-251 aa · 117 aa · 45.7% of protein
Raw token
Response_reg:135:4.09e-33:251:117:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EUBHAL_RS12510
Response regulator, unclassified
Anaerobutyricum hallii DSM 3353 · GCF_000173975
ClassRRTypeunclassifiedLength256 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000173975#EUBHAL_RS12510Stable P2CS identifier used across views.
GenomeGCF_000173975Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerobutyricum
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length256 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage117 / 256 aa (45.7%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa256 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:135:4.09e-33:251:117:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000173975::NZ_ACEP01000131.1::G00006
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span5606-6376Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEUBHAL_02830RefSeq proteinWP_005350468.1
Context group ID
GCF_000173975::NZ_ACEP01000131.1::G00006Context members
EUBHAL_RS12510
Partner locus tags
EUBHAL_RS12510
Partner old locus tags
EUBHAL_02830
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_005350468.1Primary protein accession used for annex mappings.
UniProt accessionC0EZG9Primary UniProt accession resolved in the annex database.
UniProt IDC0EZG9_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEUBHAL_RS12510Primary locus identifier stored in the genes table.
Old locus tagEUBHAL_02830Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_ACEP01000131.1Sequence record reported by the local genomic context database.
Genomic interval5 606-6 376 nt771 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span5 606-6 376 ntGCF_000173975::NZ_ACEP01000131.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000173975::NZ_ACEP01000131.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_ACEP01000131.1All displayed genes belong to this local TCS context.
Neighborhood span5 606-6 376 nt771 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
5 606 nt6 376 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
EUBHAL_RS12510GCF_000173975#EUBHAL_RS12510
RRunclassifiedCurrent focus
5 606-6 376 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000173975#EUBHAL_RS12510The current gene is the representative for this cluster.
PFAM architectureHATPase_c + Response_reg2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0673172
Simplified PFAM architecture for RROC_0673172
PFAM domain coverage: 223 / 256 aa (87.1%)
1 aa256 aa
HATPase_cResponse_reg
- Simplified architecture: HATPase_c + Response_reg
- Raw architecture: HATPase_c[2-108] | Response_reg[135-250]
- Domain count: 2
- Matched identifier: RROC_0673172
- Positioned domains: HATPase_c 2-108 ; HATPase_c 2-108 ; Response_reg 135-250 ; Response_reg 135-250
Cluster members and taxonomy
Representative gene: GCF_000173975#EUBHAL_RS12510
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 411 469 · GCF_000173975
AssemblyASM17397v1 · Contighaploid
Genome composition3 290 996 bp · 38,0% GCAnaerobutyricum hallii DSM 3353
Signal transduction countsGenes 76 · HK 37 · RR 37CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerobutyricum
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerobutyricum
Related genes
Preview from the same derived genome key