1 Response_reg#1
4-92 aa · 89 aa · 36.0% of protein
Raw token
Response_reg:4:0.00000251:92:90:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EUBHAL_RS00840
Response regulator LytTR family
Anaerobutyricum hallii DSM 3353 · GCF_000173975
ClassRRTypeLytTRLength247 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000173975#EUBHAL_RS00840Stable P2CS identifier used across views.
GenomeGCF_000173975Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerobutyricum
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length247 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage175 / 247 aa (70.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa247 aa
Domain-by-domain annotation2 items
2 LytTR#2
140-225 aa · 86 aa · 34.8% of protein
Raw token
LytTR:140:2.02e-16:225:94:98- Raw architecture: Response_reg:4:0.00000251:92:90:111#LytTR:140:2.02e-16:225:94:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000173975::NZ_ACEP01000011.1::G00043
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span44900-45643Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEUBHAL_00184RefSeq proteinWP_005343616.1
Context group ID
GCF_000173975::NZ_ACEP01000011.1::G00043Context members
EUBHAL_RS00840
Partner locus tags
EUBHAL_RS00840
Partner old locus tags
EUBHAL_00184
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_005343616.1Primary protein accession used for annex mappings.
UniProt accessionA0A173UCN3Primary UniProt accession resolved in the annex database.
UniProt IDA0A173UCN3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEUBHAL_RS00840Primary locus identifier stored in the genes table.
Old locus tagEUBHAL_00184Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_ACEP01000011.1Sequence record reported by the local genomic context database.
Genomic interval44 900-45 643 nt744 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span44 900-45 643 ntGCF_000173975::NZ_ACEP01000011.1::G00043
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000173975::NZ_ACEP01000011.1::G00043Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_ACEP01000011.1All displayed genes belong to this local TCS context.
Neighborhood span44 900-45 643 nt744 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
44 900 nt45 643 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
EUBHAL_RS00840GCF_000173975#EUBHAL_RS00840
RRLytTRCurrent focus
44 900-45 643 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000173975#EUBHAL_RS00840The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0756432
Simplified PFAM architecture for RROC_0756432
PFAM domain coverage: 190 / 247 aa (76.9%)
1 aa247 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-106] | LytTR[140-226]
- Domain count: 2
- Matched identifier: RROC_0756432
- Positioned domains: Response_reg 4-106 ; Response_reg 4-106 ; LytTR 140-226 ; LytTR 140-226
Cluster members and taxonomy
Representative gene: GCF_000173975#EUBHAL_RS00840
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 411 469 · GCF_000173975
AssemblyASM17397v1 · Contighaploid
Genome composition3 290 996 bp · 38,0% GCAnaerobutyricum hallii DSM 3353
Signal transduction countsGenes 76 · HK 37 · RR 37CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerobutyricum
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerobutyricum
Related genes
Preview from the same derived genome key