1 PAS_3#1
58-146 aa · 89 aa · 9.3% of protein
Raw token
PAS_3:58:5.42e-21:146:89:89P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EUBHAL_RS01735
Histidine kinase, Hybrid
Anaerobutyricum hallii DSM 3353 · GCF_000173975
ClassHKTypeHybridLength958 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000173975#EUBHAL_RS01735Stable P2CS identifier used across views.
GenomeGCF_000173975Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerobutyricum
Domain signature
Compact overview inferred from the domain field
PAS_3HisKAHATPase_cResponse_reg
Protein length958 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage505 / 958 aa (52.7%)Merged over positioned domains only.
Domain description1 PAS_3,1 HisKA,1 HATPase_c,2 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa958 aa
Domain-by-domain annotation5 items
2 HisKA#2
448-514 aa · 67 aa · 7.0% of protein
Raw token
HisKA:448:0.00000000000000269:514:67:643 HATPase_c#3
561-675 aa · 115 aa · 12.0% of protein
Raw token
HATPase_c:561:8.74e-31:675:115:1094 Response_reg#4
695-811 aa · 117 aa · 12.2% of protein
Raw token
Response_reg:695:4.3e-19:811:117:1115 Response_reg#5
839-955 aa · 117 aa · 12.2% of protein
Raw token
Response_reg:839:1.53e-29:955:117:111- Raw architecture: PAS_3:58:5.42e-21:146:89:89#HisKA:448:0.00000000000000269:514:67:64#HATPase_c:561:8.74e-31:675:115:109#Response_reg:695:4.3e-19:811:117:111#Response_reg:839:1.53e-29:955:117:111
- Domain description: 1 PAS_3,1 HisKA,1 HATPase_c,2 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000173975::NZ_ACEP01000028.1::G00041
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span504-3380Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEUBHAL_00397RefSeq proteinWP_005344115.1
Context group ID
GCF_000173975::NZ_ACEP01000028.1::G00041Context members
EUBHAL_RS01735
Partner locus tags
EUBHAL_RS01735
Partner old locus tags
EUBHAL_00397
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_005344115.1Primary protein accession used for annex mappings.
UniProt accessionC0ESM4Primary UniProt accession resolved in the annex database.
UniProt IDC0ESM4_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEUBHAL_RS01735Primary locus identifier stored in the genes table.
Old locus tagEUBHAL_00397Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_ACEP01000028.1Sequence record reported by the local genomic context database.
Genomic interval504-3 380 nt2 877 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span504-3 380 ntGCF_000173975::NZ_ACEP01000028.1::G00041
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000173975::NZ_ACEP01000028.1::G00041Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_ACEP01000028.1All displayed genes belong to this local TCS context.
Neighborhood span504-3 380 nt2 877 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
504 nt3 380 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
EUBHAL_RS01735GCF_000173975#EUBHAL_RS01735
HKHybridCurrent focus
504-3 380 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000173975#EUBHAL_RS01735The current gene is the representative for this cluster.
PFAM architecturePAS_3 + HisKA + HATPase_c + Response_reg + Response_reg5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0319047
Simplified PFAM architecture for HKOC_0319047
PFAM domain coverage: 506 / 958 aa (52.8%)
1 aa958 aa
PAS_3HisKAHATPase_cResponse_regResponse_reg
- Simplified architecture: PAS_3 + HisKA + HATPase_c + Response_reg + Response_reg
- Raw architecture: PAS_3[57-146] | HisKA[448-514] | HATPase_c[561-677] | Response_reg[695-810] | Response_reg[839-954]
- Domain count: 5
- Matched identifier: HKOC_0319047
- Positioned domains: PAS_3 57-146 ; HisKA 448-514 ; HATPase_c 561-677 ; Response_reg 695-810 ; Response_reg 839-954
Cluster members and taxonomy
Representative gene: GCF_000173975#EUBHAL_RS01735
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 411 469 · GCF_000173975
AssemblyASM17397v1 · Contighaploid
Genome composition3 290 996 bp · 38,0% GCAnaerobutyricum hallii DSM 3353
Signal transduction countsGenes 76 · HK 37 · RR 37CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerobutyricum
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerobutyricum
Related genes
Preview from the same derived genome key