1 Response_reg#1
4-117 aa · 114 aa · 32.1% of protein
Raw token
Response_reg:4:6.95e-27:117:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EUBHAL_RS02320
Response regulator, unclassified
Anaerobutyricum hallii DSM 3353 · GCF_000173975
ClassRRTypeunclassifiedLength355 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000173975#EUBHAL_RS02320Stable P2CS identifier used across views.
GenomeGCF_000173975Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerobutyricum
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length355 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage185 / 355 aa (52.1%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa355 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
251-285 aa · 35 aa · 9.9% of protein
Raw token
HTH_AraC:251:0.00000000185:285:35:423 HTH_AraC#3
306-341 aa · 36 aa · 10.1% of protein
Raw token
HTH_AraC:306:0.00000000902:341:36:42- Raw architecture: Response_reg:4:6.95e-27:117:114:111#HTH_AraC:251:0.00000000185:285:35:42#HTH_AraC:306:0.00000000902:341:36:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000173975::NZ_ACEP01000031.1::G00039
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span18465-20783Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEUBHAL_00528RefSeq proteinWP_005344407.1
Context group ID
GCF_000173975::NZ_ACEP01000031.1::G00039Context members
EUBHAL_RS02320EUBHAL_RS02325
Partner locus tags
EUBHAL_RS02320EUBHAL_RS02325
Partner old locus tags
EUBHAL_00528EUBHAL_00529
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_005344407.1Primary protein accession used for annex mappings.
UniProt accessionC0ET05Primary UniProt accession resolved in the annex database.
UniProt IDC0ET05_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEUBHAL_RS02320Primary locus identifier stored in the genes table.
Old locus tagEUBHAL_00528Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_ACEP01000031.1Sequence record reported by the local genomic context database.
Genomic interval18 465-19 532 nt1 068 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span18 465-20 783 ntGCF_000173975::NZ_ACEP01000031.1::G00039
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000173975::NZ_ACEP01000031.1::G00039Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_ACEP01000031.1All displayed genes belong to this local TCS context.
Neighborhood span18 465-20 783 nt2 319 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
18 465 nt20 783 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EUBHAL_RS02320GCF_000173975#EUBHAL_RS02320
RRunclassifiedCurrent focus
18 465-19 532 nt · Reverse (-)
EUBHAL_RS02325GCF_000173975#EUBHAL_RS02325
HKClassic
19 548-20 783 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000173975#EUBHAL_RS02320The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0468584
Simplified PFAM architecture for RROC_0468584
PFAM domain coverage: 191 / 355 aa (53.8%)
1 aa355 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-116] | HTH_18[265-342]
- Domain count: 2
- Matched identifier: RROC_0468584
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; HTH_18 265-342 ; HTH_18 265-342
Cluster members and taxonomy
Representative gene: GCF_000173975#EUBHAL_RS02320
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 411 469 · GCF_000173975
AssemblyASM17397v1 · Contighaploid
Genome composition3 290 996 bp · 38,0% GCAnaerobutyricum hallii DSM 3353
Signal transduction countsGenes 76 · HK 37 · RR 37CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerobutyricum
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerobutyricum
Related genes
Preview from the same derived genome key