1 GGDEF#1
199-349 aa · 151 aa · 16.7% of protein
Raw token
GGDEF:199:1.56e-21:349:157:160P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EUBHAL_RS01280
Histidine kinase, Classic
Anaerobutyricum hallii DSM 3353 · GCF_000173975
ClassHKTypeClassicLength906 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000173975#EUBHAL_RS01280Stable P2CS identifier used across views.
GenomeGCF_000173975Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerobutyricum
Domain signature
Compact overview inferred from the domain field
GGDEFHisKAHATPase_c
Protein length906 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage331 / 906 aa (36.5%)Merged over positioned domains only.
Domain description1 GGDEF,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa906 aa
Domain-by-domain annotation3 items
2 HisKA#2
675-741 aa · 67 aa · 7.4% of protein
Raw token
HisKA:675:0.0000000000000214:741:67:643 HATPase_c#3
788-900 aa · 113 aa · 12.5% of protein
Raw token
HATPase_c:788:1.31e-25:900:113:109- Raw architecture: GGDEF:199:1.56e-21:349:157:160#HisKA:675:0.0000000000000214:741:67:64#HATPase_c:788:1.31e-25:900:113:109
- Domain description: 1 GGDEF,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000173975::NZ_ACEP01000018.1::G00042
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span26-3265Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEUBHAL_00287RefSeq proteinWP_242648719.1
Context group ID
GCF_000173975::NZ_ACEP01000018.1::G00042Context members
EUBHAL_RS16065EUBHAL_RS01280
Partner locus tags
EUBHAL_RS16065EUBHAL_RS01280
Partner old locus tags
EUBHAL_00286EUBHAL_00287
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_242648719.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEUBHAL_RS01280Primary locus identifier stored in the genes table.
Old locus tagEUBHAL_00287Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_ACEP01000018.1Sequence record reported by the local genomic context database.
Genomic interval545-3 265 nt2 721 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span26-3 265 ntGCF_000173975::NZ_ACEP01000018.1::G00042
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000173975::NZ_ACEP01000018.1::G00042Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_ACEP01000018.1All displayed genes belong to this local TCS context.
Neighborhood span26-3 265 nt3 240 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
26 nt3 265 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EUBHAL_RS16065GCF_000173975#EUBHAL_RS16065
RRCheY
26-478 nt · Reverse (-)
EUBHAL_RS01280GCF_000173975#EUBHAL_RS01280
HKClassicCurrent focus
545-3 265 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000173975#EUBHAL_RS01280The current gene is the representative for this cluster.
PFAM architectureGGDEF + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0397089
Simplified PFAM architecture for HKOC_0397089
PFAM domain coverage: 331 / 906 aa (36.5%)
1 aa906 aa
GGDEFHisKAHATPase_c
- Simplified architecture: GGDEF + HisKA + HATPase_c
- Raw architecture: GGDEF[200-351] | HisKA[675-741] | HATPase_c[789-900]
- Domain count: 3
- Matched identifier: HKOC_0397089
- Positioned domains: GGDEF 200-351 ; HisKA 675-741 ; HATPase_c 789-900
Cluster members and taxonomy
Representative gene: GCF_000173975#EUBHAL_RS01280
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 411 469 · GCF_000173975
AssemblyASM17397v1 · Contighaploid
Genome composition3 290 996 bp · 38,0% GCAnaerobutyricum hallii DSM 3353
Signal transduction countsGenes 76 · HK 37 · RR 37CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerobutyricum
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerobutyricum
Related genes
Preview from the same derived genome key