1 PocR#1
11-172 aa · 162 aa · 39.4% of protein
Raw token
PocR:11:5.97e-60:172:163:162P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EUBHAL_RS02325
Histidine kinase, Classic
Anaerobutyricum hallii DSM 3353 · GCF_000173975
ClassHKTypeClassicLength411 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000173975#EUBHAL_RS02325Stable P2CS identifier used across views.
GenomeGCF_000173975Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerobutyricum
Domain signature
Compact overview inferred from the domain field
PocRHis_kinaseHATPase_c
Protein length411 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage346 / 411 aa (84.2%)Merged over positioned domains only.
Domain description1 PocR,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa411 aa
Domain-by-domain annotation3 items
2 His_kinase#2
205-284 aa · 80 aa · 19.5% of protein
Raw token
His_kinase:205:6.99e-34:284:80:803 HATPase_c#3
307-410 aa · 104 aa · 25.3% of protein
Raw token
HATPase_c:307:0.0000000000575:410:107:109- Raw architecture: PocR:11:5.97e-60:172:163:162#His_kinase:205:6.99e-34:284:80:80#HATPase_c:307:0.0000000000575:410:107:109
- Domain description: 1 PocR,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000173975::NZ_ACEP01000031.1::G00039
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span18465-20783Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEUBHAL_00529RefSeq proteinWP_022170137.1
Context group ID
GCF_000173975::NZ_ACEP01000031.1::G00039Context members
EUBHAL_RS02320EUBHAL_RS02325
Partner locus tags
EUBHAL_RS02320EUBHAL_RS02325
Partner old locus tags
EUBHAL_00528EUBHAL_00529
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_022170137.1Primary protein accession used for annex mappings.
UniProt accessionA0A174DCJ2Primary UniProt accession resolved in the annex database.
UniProt IDA0A174DCJ2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEUBHAL_RS02325Primary locus identifier stored in the genes table.
Old locus tagEUBHAL_00529Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_ACEP01000031.1Sequence record reported by the local genomic context database.
Genomic interval19 548-20 783 nt1 236 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span18 465-20 783 ntGCF_000173975::NZ_ACEP01000031.1::G00039
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000173975::NZ_ACEP01000031.1::G00039Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_ACEP01000031.1All displayed genes belong to this local TCS context.
Neighborhood span18 465-20 783 nt2 319 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
18 465 nt20 783 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EUBHAL_RS02320GCF_000173975#EUBHAL_RS02320
RRunclassified
18 465-19 532 nt · Reverse (-)
EUBHAL_RS02325GCF_000173975#EUBHAL_RS02325
HKClassicCurrent focus
19 548-20 783 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000173975#EUBHAL_RS02325The current gene is the representative for this cluster.
PFAM architecturePocR + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2345292
Simplified PFAM architecture for HKOC_2345292
PFAM domain coverage: 347 / 411 aa (84.4%)
1 aa411 aa
PocRHis_kinaseHATPase_c
- Simplified architecture: PocR + His_kinase + HATPase_c
- Raw architecture: PocR[11-172] | His_kinase[205-284] | HATPase_c[305-409]
- Domain count: 3
- Matched identifier: HKOC_2345292
- Positioned domains: PocR 11-172 ; His_kinase 205-284 ; HATPase_c 305-409
Cluster members and taxonomy
Representative gene: GCF_000173975#EUBHAL_RS02325
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 411 469 · GCF_000173975
AssemblyASM17397v1 · Contighaploid
Genome composition3 290 996 bp · 38,0% GCAnaerobutyricum hallii DSM 3353
Signal transduction countsGenes 76 · HK 37 · RR 37CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerobutyricum
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerobutyricum
Related genes
Preview from the same derived genome key