1 Response_reg#1
17-126 aa · 110 aa · 46.6% of protein
Raw token
Response_reg:17:5.36e-34:126:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EUBHAL_RS07275
Response regulator OmpR family
Anaerobutyricum hallii DSM 3353 · GCF_000173975
ClassRRTypeOmpRLength236 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000173975#EUBHAL_RS07275Stable P2CS identifier used across views.
GenomeGCF_000173975Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerobutyricum
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length236 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 236 aa (77.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa236 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
160-232 aa · 73 aa · 30.9% of protein
Raw token
Trans_reg_C:160:5.13e-26:232:75:77- Raw architecture: Response_reg:17:5.36e-34:126:110:111#Trans_reg_C:160:5.13e-26:232:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000173975::NZ_ACEP01000076.1::G00023
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span14569-16322Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEUBHAL_01646RefSeq proteinWP_005347237.1
Context group ID
GCF_000173975::NZ_ACEP01000076.1::G00023Context members
EUBHAL_RS07275EUBHAL_RS07280
Partner locus tags
EUBHAL_RS07275EUBHAL_RS07280
Partner old locus tags
EUBHAL_01646EUBHAL_01647
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_005347237.1Primary protein accession used for annex mappings.
UniProt accessionA0ABV1HGC0Primary UniProt accession resolved in the annex database.
UniProt IDA0ABV1HGC0_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEUBHAL_RS07275Primary locus identifier stored in the genes table.
Old locus tagEUBHAL_01646Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_ACEP01000076.1Sequence record reported by the local genomic context database.
Genomic interval14 569-15 279 nt711 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span14 569-16 322 ntGCF_000173975::NZ_ACEP01000076.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000173975::NZ_ACEP01000076.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_ACEP01000076.1All displayed genes belong to this local TCS context.
Neighborhood span14 569-16 322 nt1 754 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
14 569 nt16 322 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EUBHAL_RS07275GCF_000173975#EUBHAL_RS07275
RROmpRCurrent focus
14 569-15 279 nt · Forward (+)
EUBHAL_RS07280GCF_000173975#EUBHAL_RS07280
HKClassic
15 279-16 322 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000173975#EUBHAL_RS07275The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0988634
Simplified PFAM architecture for RROC_0988634
PFAM domain coverage: 182 / 236 aa (77.1%)
1 aa236 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[17-125] | Trans_reg_C[160-232]
- Domain count: 2
- Matched identifier: RROC_0988634
- Positioned domains: Response_reg 17-125 ; Response_reg 17-125 ; Trans_reg_C 160-232 ; Trans_reg_C 160-232
Cluster members and taxonomy
Representative gene: GCF_000173975#EUBHAL_RS07275
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 411 469 · GCF_000173975
AssemblyASM17397v1 · Contighaploid
Genome composition3 290 996 bp · 38,0% GCAnaerobutyricum hallii DSM 3353
Signal transduction countsGenes 76 · HK 37 · RR 37CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerobutyricum
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerobutyricum
Related genes
Preview from the same derived genome key