1 HisKA#1
384-448 aa · 65 aa · 10.7% of protein
Raw token
HisKA:384:0.00000144:448:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FN517_RS09950
Histidine kinase, Classic
Escherichia coli · GCF_902164025
ClassHKTypeClassicLength606 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_902164025#FN517_RS09950Stable P2CS identifier used across views.
GenomeGCF_902164025Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length606 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage171 / 606 aa (28.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa606 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
495-600 aa · 106 aa · 17.5% of protein
Raw token
HATPase_c:495:4.02e-29:600:109:109- Raw architecture: HisKA:384:0.00000144:448:65:64#HATPase_c:495:4.02e-29:600:109:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_902164025::NZ_CABHBW010000005.1::G00020
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span73276-76447Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_902164025::NZ_CABHBW010000005.1::G00020Context members
FN517_RS09945FN517_RS09950
Partner locus tags
FN517_RS09945FN517_RS09950
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000704411.1Primary protein accession used for annex mappings.
UniProt accessionA0A7I0KVE7Primary UniProt accession resolved in the annex database.
UniProt IDA0A7I0KVE7_ECO25Display identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFN517_RS09950Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CABHBW010000005.1Sequence record reported by the local genomic context database.
Genomic interval74 627-76 447 nt1 821 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span73 276-76 447 ntGCF_902164025::NZ_CABHBW010000005.1::G00020
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_902164025::NZ_CABHBW010000005.1::G00020Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CABHBW010000005.1All displayed genes belong to this local TCS context.
Neighborhood span73 276-76 447 nt3 172 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
73 276 nt76 447 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
FN517_RS09945GCF_902164025#FN517_RS09945
RRNtrC
73 276-74 634 nt · Reverse (-)
FN517_RS09950GCF_902164025#FN517_RS09950
HKClassicCurrent focus
74 627-76 447 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000010485#ECSF_RS20915Use this link to inspect the representative gene detail.
PFAM architecturedCache_1 + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1023122
Simplified PFAM architecture for HKOC_1023122
PFAM domain coverage: 285 / 606 aa (47.0%)
1 aa606 aa
dCache_1HATPase_c
- Simplified architecture: dCache_1 + HATPase_c
- Raw architecture: dCache_1[50-228] | HATPase_c[495-600]
- Domain count: 2
- Matched identifier: HKOC_1023122
- Positioned domains: dCache_1 50-228 ; HATPase_c 495-600
Cluster members and taxonomy
Representative gene: GCF_000010485#ECSF_RS20915
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 562 · GCF_902164025
Assembly25964_2#194 · Scaffoldhaploid
Genome composition5 252 367 bp · 50,0% GCEscherichia coli
Signal transduction countsGenes 66 · HK 32 · RR 34CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyEnterobacteriaceaeGenusEscherichia
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Enterobacteriaceae7Escherichia
Related genes
Preview from the same derived genome key