1 HisKA#1
384-448 aa · 65 aa · 10.7% of protein
Raw token
HisKA:384:0.00000144:448:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ECSF_RS20915
Histidine kinase, Classic
Escherichia coli SE15 · GCF_000010485
ClassHKTypeClassicLength606 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000010485#ECSF_RS20915Stable P2CS identifier used across views.
GenomeGCF_000010485Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length606 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage171 / 606 aa (28.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa606 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
495-600 aa · 106 aa · 17.5% of protein
Raw token
HATPase_c:495:4.02e-29:600:109:109- Raw architecture: HisKA:384:0.00000144:448:65:64#HATPase_c:495:4.02e-29:600:109:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000010485::NC_013654.1::G00033
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span4278579-4281750Genomic interval covered by the local TCS group.
Identifiers
Old locus tagECSF_3924RefSeq proteinWP_000704411.1
Context group ID
GCF_000010485::NC_013654.1::G00033Context members
ECSF_RS20910ECSF_RS20915
Partner locus tags
ECSF_RS20910ECSF_RS20915
Partner old locus tags
ECSF_3923ECSF_3924
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000704411.1Primary protein accession used for annex mappings.
UniProt accessionA0A7I0KVE7Primary UniProt accession resolved in the annex database.
UniProt IDA0A7I0KVE7_ECO25Display identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagECSF_RS20915Primary locus identifier stored in the genes table.
Old locus tagECSF_3924Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_013654.1Sequence record reported by the local genomic context database.
Genomic interval4 279 930-4 281 750 nt1 821 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span4 278 579-4 281 750 ntGCF_000010485::NC_013654.1::G00033
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000010485::NC_013654.1::G00033Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_013654.1All displayed genes belong to this local TCS context.
Neighborhood span4 278 579-4 281 750 nt3 172 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 278 579 nt4 281 750 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ECSF_RS20910GCF_000010485#ECSF_RS20910
RRNtrC
4 278 579-4 279 937 nt · Reverse (-)
ECSF_RS20915GCF_000010485#ECSF_RS20915
HKClassicCurrent focus
4 279 930-4 281 750 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000010485#ECSF_RS20915The current gene is the representative for this cluster.
PFAM architecturedCache_1 + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1023122
Simplified PFAM architecture for HKOC_1023122
PFAM domain coverage: 285 / 606 aa (47.0%)
1 aa606 aa
dCache_1HATPase_c
- Simplified architecture: dCache_1 + HATPase_c
- Raw architecture: dCache_1[50-228] | HATPase_c[495-600]
- Domain count: 2
- Matched identifier: HKOC_1023122
- Positioned domains: dCache_1 50-228 ; HATPase_c 495-600
Cluster members and taxonomy
Representative gene: GCF_000010485#ECSF_RS20915
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 431 946 · GCF_000010485
AssemblyASM1048v1 · Complete Genomehaploid
Genome composition4 839 683 bp · 50,5% GCEscherichia coli SE15
Signal transduction countsGenes 63 · HK 31 · RR 32CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyEnterobacteriaceaeGenusEscherichia
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Enterobacteriaceae7Escherichia
Related genes
Preview from the same derived genome key