1 Response_reg#1
7-115 aa · 109 aa · 21.2% of protein
Raw token
Response_reg:7:4.07e-26:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0F24_RS13775
Response regulator, unclassified
Hungatella effluvii · GCF_034131825
ClassRRTypeunclassifiedLength513 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034131825#U0F24_RS13775Stable P2CS identifier used across views.
GenomeGCF_034131825Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length513 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage183 / 513 aa (35.7%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa513 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
422-460 aa · 39 aa · 7.6% of protein
Raw token
HTH_AraC:422:0.00000139:460:39:423 HTH_AraC#3
475-509 aa · 35 aa · 6.8% of protein
Raw token
HTH_AraC:475:0.000000000491:509:35:42- Raw architecture: Response_reg:7:4.07e-26:115:111:111#HTH_AraC:422:0.00000139:460:39:42#HTH_AraC:475:0.000000000491:509:35:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034131825::NZ_JAWYIA010000296.1::G00069
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span387-3448Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034131825::NZ_JAWYIA010000296.1::G00069Context members
U0F24_RS13775U0F24_RS13780
Partner locus tags
U0F24_RS13775U0F24_RS13780
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_321008416.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0F24_RS13775Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWYIA010000296.1Sequence record reported by the local genomic context database.
Genomic interval387-1 928 nt1 542 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span387-3 448 ntGCF_034131825::NZ_JAWYIA010000296.1::G00069
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034131825::NZ_JAWYIA010000296.1::G00069Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWYIA010000296.1All displayed genes belong to this local TCS context.
Neighborhood span387-3 448 nt3 062 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
387 nt3 448 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
U0F24_RS13775GCF_034131825#U0F24_RS13775
RRunclassifiedCurrent focus
387-1 928 nt · Reverse (-)
U0F24_RS13780GCF_034131825#U0F24_RS13780
HKClassic
1 961-3 448 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_034131825#U0F24_RS13775The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0142527
Simplified PFAM architecture for RROC_0142527
PFAM domain coverage: 190 / 513 aa (37.0%)
1 aa513 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[6-116] | HTH_18[433-511]
- Domain count: 2
- Matched identifier: RROC_0142527
- Positioned domains: Response_reg 6-116 ; HTH_18 433-511
Cluster members and taxonomy
Representative gene: GCF_034131825#U0F24_RS13775
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034131825
AssemblyASM3413182v1 · Scaffoldhaploid
Genome composition6 979 054 bp · 49,0% GCHungatella effluvii
Signal transduction countsGenes 291 · HK 138 · RR 146CheA 1 · PP 7
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key