1 HAMP#1
274-341 aa · 68 aa · 12.2% of protein
Raw token
HAMP:274:0.0000000000216:341:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0F24_RS00270
Histidine kinase, Classic
Hungatella effluvii · GCF_034131825
ClassHKTypeClassicLength557 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034131825#U0F24_RS00270Stable P2CS identifier used across views.
GenomeGCF_034131825Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length557 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage235 / 557 aa (42.2%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa557 aa
Domain-by-domain annotation3 items
2 His_kinase#2
356-428 aa · 73 aa · 13.1% of protein
Raw token
His_kinase:356:3.69e-21:428:73:803 HATPase_c#3
458-551 aa · 94 aa · 16.9% of protein
Raw token
HATPase_c:458:0.000000158:551:98:109- Raw architecture: HAMP:274:0.0000000000216:341:68:69#His_kinase:356:3.69e-21:428:73:80#HATPase_c:458:0.000000158:551:98:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034131825::NZ_JAWYIA010000006.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span543-3808Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034131825::NZ_JAWYIA010000006.1::G00004Context members
U0F24_RS00270U0F24_RS00275
Partner locus tags
U0F24_RS00270U0F24_RS00275
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_321015555.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0F24_RS00270Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWYIA010000006.1Sequence record reported by the local genomic context database.
Genomic interval543-2 216 nt1 674 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span543-3 808 ntGCF_034131825::NZ_JAWYIA010000006.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034131825::NZ_JAWYIA010000006.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWYIA010000006.1All displayed genes belong to this local TCS context.
Neighborhood span543-3 808 nt3 266 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
543 nt3 808 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
U0F24_RS00270GCF_034131825#U0F24_RS00270
HKClassicCurrent focus
543-2 216 nt · Forward (+)
U0F24_RS00275GCF_034131825#U0F24_RS00275
RRunclassified
2 231-3 808 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_034131825#U0F24_RS00270The current gene is the representative for this cluster.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1270650
Simplified PFAM architecture for HKOC_1270650
PFAM domain coverage: 214 / 557 aa (38.4%)
1 aa557 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[294-339] | His_kinase[356-428] | HATPase_c[458-552]
- Domain count: 3
- Matched identifier: HKOC_1270650
- Positioned domains: HAMP 294-339 ; His_kinase 356-428 ; HATPase_c 458-552
Cluster members and taxonomy
Representative gene: GCF_034131825#U0F24_RS00270
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034131825
AssemblyASM3413182v1 · Scaffoldhaploid
Genome composition6 979 054 bp · 49,0% GCHungatella effluvii
Signal transduction countsGenes 291 · HK 138 · RR 146CheA 1 · PP 7
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key