1 Response_reg#1
5-106 aa · 102 aa · 19.4% of protein
Raw token
Response_reg:5:1.21e-25:106:102:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0F24_RS00275
Response regulator, unclassified
Hungatella effluvii · GCF_034131825
ClassRRTypeunclassifiedLength525 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034131825#U0F24_RS00275Stable P2CS identifier used across views.
GenomeGCF_034131825Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length525 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage180 / 525 aa (34.3%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa525 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
433-473 aa · 41 aa · 7.8% of protein
Raw token
HTH_AraC:433:0.0000000154:473:41:423 HTH_AraC#3
487-523 aa · 37 aa · 7.0% of protein
Raw token
HTH_AraC:487:0.00000546:523:37:42- Raw architecture: Response_reg:5:1.21e-25:106:102:111#HTH_AraC:433:0.0000000154:473:41:42#HTH_AraC:487:0.00000546:523:37:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034131825::NZ_JAWYIA010000006.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span543-3808Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034131825::NZ_JAWYIA010000006.1::G00004Context members
U0F24_RS00270U0F24_RS00275
Partner locus tags
U0F24_RS00270U0F24_RS00275
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_321009789.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0F24_RS00275Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWYIA010000006.1Sequence record reported by the local genomic context database.
Genomic interval2 231-3 808 nt1 578 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span543-3 808 ntGCF_034131825::NZ_JAWYIA010000006.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034131825::NZ_JAWYIA010000006.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWYIA010000006.1All displayed genes belong to this local TCS context.
Neighborhood span543-3 808 nt3 266 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
543 nt3 808 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
U0F24_RS00270GCF_034131825#U0F24_RS00270
HKClassic
543-2 216 nt · Forward (+)
U0F24_RS00275GCF_034131825#U0F24_RS00275
RRunclassifiedCurrent focus
2 231-3 808 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_034131825#U0F24_RS00275The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0119858
Simplified PFAM architecture for RROC_0119858
PFAM domain coverage: 182 / 525 aa (34.7%)
1 aa525 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[5-107] | HTH_18[446-524]
- Domain count: 2
- Matched identifier: RROC_0119858
- Positioned domains: Response_reg 5-107 ; HTH_18 446-524
Cluster members and taxonomy
Representative gene: GCF_034131825#U0F24_RS00275
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034131825
AssemblyASM3413182v1 · Scaffoldhaploid
Genome composition6 979 054 bp · 49,0% GCHungatella effluvii
Signal transduction countsGenes 291 · HK 138 · RR 146CheA 1 · PP 7
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key