1 Response_reg#1
4-113 aa · 110 aa · 37.7% of protein
Raw token
Response_reg:4:2.02e-30:113:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0F24_RS00050
Response regulator, unclassified
Hungatella effluvii · GCF_034131825
ClassRRTypeunclassifiedLength292 aaTM0ValidatedNoCompleteYesContexttetrad
Gene IDGCF_034131825#U0F24_RS00050Stable P2CS identifier used across views.
GenomeGCF_034131825Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length292 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage185 / 292 aa (63.4%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa292 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
197-238 aa · 42 aa · 14.4% of protein
Raw token
HTH_AraC:197:0.000000656:238:42:423 HTH_AraC#3
255-287 aa · 33 aa · 11.3% of protein
Raw token
HTH_AraC:255:0.00000000523:287:33:42- Raw architecture: Response_reg:4:2.02e-30:113:110:111#HTH_AraC:197:0.000000656:238:42:42#HTH_AraC:255:0.00000000523:287:33:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltetradGCF_034131825::NZ_JAWYIA010000001.1::G00001
Group size44 locus tags listed below.
HK / RR2 / 2Counts resolved for the local TCS neighborhood.
Context span6696-12764Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034131825::NZ_JAWYIA010000001.1::G00001Context members
U0F24_RS00030U0F24_RS00035U0F24_RS00045U0F24_RS00050
Partner locus tags
U0F24_RS00030U0F24_RS00035U0F24_RS00045U0F24_RS00050
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_321009606.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0F24_RS00050Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWYIA010000001.1Sequence record reported by the local genomic context database.
Genomic interval11 886-12 764 nt879 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span6 696-12 764 ntGCF_034131825::NZ_JAWYIA010000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034131825::NZ_JAWYIA010000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltetradNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWYIA010000001.1All displayed genes belong to this local TCS context.
Neighborhood span6 696-12 764 nt6 069 nt
Members41 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
6 696 nt12 764 nt
Neighborhood gene cards
4 genes in the current local neighborhood.
U0F24_RS00030GCF_034131825#U0F24_RS00030
HKClassic
6 696-8 537 nt · Forward (+)
U0F24_RS00035GCF_034131825#U0F24_RS00035
RRunclassified
8 552-10 006 nt · Forward (+)
U0F24_RS00045GCF_034131825#U0F24_RS00045
HKClassic
10 269-11 762 nt · Forward (+)
U0F24_RS00050GCF_034131825#U0F24_RS00050
RRunclassifiedCurrent focus
11 886-12 764 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_034131825#U0F24_RS00050The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0585060
Simplified PFAM architecture for RROC_0585060
PFAM domain coverage: 188 / 292 aa (64.4%)
1 aa292 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-113] | HTH_18[211-288]
- Domain count: 2
- Matched identifier: RROC_0585060
- Positioned domains: Response_reg 4-113 ; HTH_18 211-288
Cluster members and taxonomy
Representative gene: GCF_034131825#U0F24_RS00050
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034131825
AssemblyASM3413182v1 · Scaffoldhaploid
Genome composition6 979 054 bp · 49,0% GCHungatella effluvii
Signal transduction countsGenes 291 · HK 138 · RR 146CheA 1 · PP 7
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key