1 Response_reg#1
5-117 aa · 113 aa · 23.3% of protein
Raw token
Response_reg:5:3.93e-30:117:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0F24_RS00035
Response regulator, unclassified
Hungatella effluvii · GCF_034131825
ClassRRTypeunclassifiedLength484 aaTM0ValidatedNoCompleteYesContexttetrad
Gene IDGCF_034131825#U0F24_RS00035Stable P2CS identifier used across views.
GenomeGCF_034131825Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length484 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage194 / 484 aa (40.1%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa484 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
387-428 aa · 42 aa · 8.7% of protein
Raw token
HTH_AraC:387:0.0000132:428:42:423 HTH_AraC#3
440-478 aa · 39 aa · 8.1% of protein
Raw token
HTH_AraC:440:0.00000231:478:39:42- Raw architecture: Response_reg:5:3.93e-30:117:113:111#HTH_AraC:387:0.0000132:428:42:42#HTH_AraC:440:0.00000231:478:39:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltetradGCF_034131825::NZ_JAWYIA010000001.1::G00001
Group size44 locus tags listed below.
HK / RR2 / 2Counts resolved for the local TCS neighborhood.
Context span6696-12764Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034131825::NZ_JAWYIA010000001.1::G00001Context members
U0F24_RS00030U0F24_RS00035U0F24_RS00045U0F24_RS00050
Partner locus tags
U0F24_RS00030U0F24_RS00035U0F24_RS00045U0F24_RS00050
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_321009605.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0F24_RS00035Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWYIA010000001.1Sequence record reported by the local genomic context database.
Genomic interval8 552-10 006 nt1 455 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span6 696-12 764 ntGCF_034131825::NZ_JAWYIA010000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034131825::NZ_JAWYIA010000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltetradNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWYIA010000001.1All displayed genes belong to this local TCS context.
Neighborhood span6 696-12 764 nt6 069 nt
Members41 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
6 696 nt12 764 nt
Neighborhood gene cards
4 genes in the current local neighborhood.
U0F24_RS00030GCF_034131825#U0F24_RS00030
HKClassic
6 696-8 537 nt · Forward (+)
U0F24_RS00035GCF_034131825#U0F24_RS00035
RRunclassifiedCurrent focus
8 552-10 006 nt · Forward (+)
U0F24_RS00045GCF_034131825#U0F24_RS00045
HKClassic
10 269-11 762 nt · Forward (+)
U0F24_RS00050GCF_034131825#U0F24_RS00050
RRunclassified
11 886-12 764 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_034131825#U0F24_RS00035The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0176730
Simplified PFAM architecture for RROC_0176730
PFAM domain coverage: 190 / 484 aa (39.3%)
1 aa484 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[5-116] | HTH_18[401-478]
- Domain count: 2
- Matched identifier: RROC_0176730
- Positioned domains: Response_reg 5-116 ; HTH_18 401-478
Cluster members and taxonomy
Representative gene: GCF_034131825#U0F24_RS00035
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034131825
AssemblyASM3413182v1 · Scaffoldhaploid
Genome composition6 979 054 bp · 49,0% GCHungatella effluvii
Signal transduction countsGenes 291 · HK 138 · RR 146CheA 1 · PP 7
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key