1 HisKA#1
534-599 aa · 66 aa · 8.7% of protein
Raw token
HisKA:534:0.0000000000000289:599:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0F24_RS01065
Histidine kinase, Classic
Hungatella effluvii · GCF_034131825
ClassHKTypeClassicLength759 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034131825#U0F24_RS01065Stable P2CS identifier used across views.
GenomeGCF_034131825Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length759 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage159 / 759 aa (20.9%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa759 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
645-737 aa · 93 aa · 12.3% of protein
Raw token
HATPase_c:645:0.0000000000000499:737:97:109- Raw architecture: HisKA:534:0.0000000000000289:599:66:64#HATPase_c:645:0.0000000000000499:737:97:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034131825::NZ_JAWYIA010000021.1::G00009
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span12429-15412Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034131825::NZ_JAWYIA010000021.1::G00009Context members
U0F24_RS01060U0F24_RS01065
Partner locus tags
U0F24_RS01060U0F24_RS01065
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117632945.1Primary protein accession used for annex mappings.
UniProt accessionA0A374P1M6Primary UniProt accession resolved in the annex database.
UniProt IDA0A374P1M6_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0F24_RS01065Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWYIA010000021.1Sequence record reported by the local genomic context database.
Genomic interval13 133-15 412 nt2 280 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span12 429-15 412 ntGCF_034131825::NZ_JAWYIA010000021.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034131825::NZ_JAWYIA010000021.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWYIA010000021.1All displayed genes belong to this local TCS context.
Neighborhood span12 429-15 412 nt2 984 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
12 429 nt15 412 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
U0F24_RS01060GCF_034131825#U0F24_RS01060
RROmpR
12 429-13 124 nt · Forward (+)
U0F24_RS01065GCF_034131825#U0F24_RS01065
HKClassicCurrent focus
13 133-15 412 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003437645#DXC88_RS24350Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0646679
Simplified PFAM architecture for HKOC_0646679
PFAM domain coverage: 158 / 759 aa (20.8%)
1 aa759 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[534-599] | HATPase_c[646-737]
- Domain count: 2
- Matched identifier: HKOC_0646679
- Positioned domains: HisKA 534-599 ; HATPase_c 646-737
Cluster members and taxonomy
Representative gene: GCF_003437645#DXC88_RS24350
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034131825
AssemblyASM3413182v1 · Scaffoldhaploid
Genome composition6 979 054 bp · 49,0% GCHungatella effluvii
Signal transduction countsGenes 291 · HK 138 · RR 146CheA 1 · PP 7
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key