1 HisKA#1
534-599 aa · 66 aa · 8.7% of protein
Raw token
HisKA:534:0.0000000000000289:599:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXC88_RS24350
Histidine kinase, Classic
Hungatella hathewayi · GCF_003437645
ClassHKTypeClassicLength759 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003437645#DXC88_RS24350Stable P2CS identifier used across views.
GenomeGCF_003437645Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length759 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage159 / 759 aa (20.9%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa759 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
645-737 aa · 93 aa · 12.3% of protein
Raw token
HATPase_c:645:0.0000000000000499:737:97:109- Raw architecture: HisKA:534:0.0000000000000289:599:66:64#HATPase_c:645:0.0000000000000499:737:97:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003437645::NZ_QSRE01000019.1::G00063
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span28575-31558Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXC88_24335RefSeq proteinWP_117632945.1
Context group ID
GCF_003437645::NZ_QSRE01000019.1::G00063Context members
DXC88_RS24350DXC88_RS24355
Partner locus tags
DXC88_RS24350DXC88_RS24355
Partner old locus tags
DXC88_24335DXC88_24340
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117632945.1Primary protein accession used for annex mappings.
UniProt accessionA0A374P1M6Primary UniProt accession resolved in the annex database.
UniProt IDA0A374P1M6_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXC88_RS24350Primary locus identifier stored in the genes table.
Old locus tagDXC88_24335Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSRE01000019.1Sequence record reported by the local genomic context database.
Genomic interval28 575-30 854 nt2 280 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span28 575-31 558 ntGCF_003437645::NZ_QSRE01000019.1::G00063
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003437645::NZ_QSRE01000019.1::G00063Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSRE01000019.1All displayed genes belong to this local TCS context.
Neighborhood span28 575-31 558 nt2 984 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
28 575 nt31 558 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXC88_RS24350GCF_003437645#DXC88_RS24350
HKClassicCurrent focus
28 575-30 854 nt · Reverse (-)
DXC88_RS24355GCF_003437645#DXC88_RS24355
RROmpR
30 863-31 558 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003437645#DXC88_RS24350The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0646679
Simplified PFAM architecture for HKOC_0646679
PFAM domain coverage: 158 / 759 aa (20.8%)
1 aa759 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[534-599] | HATPase_c[646-737]
- Domain count: 2
- Matched identifier: HKOC_0646679
- Positioned domains: HisKA 534-599 ; HATPase_c 646-737
Cluster members and taxonomy
Representative gene: GCF_003437645#DXC88_RS24350
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 154 046 · GCF_003437645
AssemblyASM343764v1 · Scaffoldhaploid
Genome composition7 708 434 bp · 49,0% GCHungatella hathewayi
Signal transduction countsGenes 289 · HK 144 · RR 142CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key