1 PAS_4#1
78-191 aa · 114 aa · 21.1% of protein
Raw token
PAS_4:78:0.0000000000000277:191:116:110P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PQ478_RS03360
Histidine kinase, Classic
Alkalihalophilus pseudofirmus · GCF_029094545
ClassHKTypeClassicLength541 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_029094545#PQ478_RS03360Stable P2CS identifier used across views.
GenomeGCF_029094545Bacteria; Bacillati; Bacillota; Bacilli; Bacillales; Bacillaceae; Alkalihalophilus
Domain signature
Compact overview inferred from the domain field
PAS_4PAS_9HisKAHATPase_c
Protein length541 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage379 / 541 aa (70.1%)Merged over positioned domains only.
Domain description1 PAS_4,1 PAS_9,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa541 aa
Domain-by-domain annotation4 items
2 PAS_9#2
212-315 aa · 104 aa · 19.2% of protein
Raw token
PAS_9:212:0.00000000000338:315:105:1023 HisKA#3
333-393 aa · 61 aa · 11.3% of protein
Raw token
HisKA:333:0.00000000000000228:393:61:644 HATPase_c#4
438-537 aa · 100 aa · 18.5% of protein
Raw token
HATPase_c:438:3.92e-29:537:104:109- Raw architecture: PAS_4:78:0.0000000000000277:191:116:110#PAS_9:212:0.00000000000338:315:105:102#HisKA:333:0.00000000000000228:393:61:64#HATPase_c:438:3.92e-29:537:104:109
- Domain description: 1 PAS_4,1 PAS_9,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_029094545::NZ_CP117835.1::G00007
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span644258-645883Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPQ478_03360RefSeq proteinWP_289235820.1
Context group ID
GCF_029094545::NZ_CP117835.1::G00007Context members
PQ478_RS03360
Partner locus tags
PQ478_RS03360
Partner old locus tags
PQ478_03360
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_289235820.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPQ478_RS03360Primary locus identifier stored in the genes table.
Old locus tagPQ478_03360Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP117835.1Sequence record reported by the local genomic context database.
Genomic interval644 258-645 883 nt1 626 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span644 258-645 883 ntGCF_029094545::NZ_CP117835.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_029094545::NZ_CP117835.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP117835.1All displayed genes belong to this local TCS context.
Neighborhood span644 258-645 883 nt1 626 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
644 258 nt645 883 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
PQ478_RS03360GCF_029094545#PQ478_RS03360
HKClassicCurrent focus
644 258-645 883 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_029094545#PQ478_RS03360The current gene is the representative for this cluster.
PFAM architecturePAS_4 + PAS_9 + HisKA + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1319314
Simplified PFAM architecture for HKOC_1319314
PFAM domain coverage: 380 / 541 aa (70.2%)
1 aa541 aa
PAS_4PAS_9HisKAHATPase_c
- Simplified architecture: PAS_4 + PAS_9 + HisKA + HATPase_c
- Raw architecture: PAS_4[78-191] | PAS_9[213-315] | HisKA[333-393] | HATPase_c[438-539]
- Domain count: 4
- Matched identifier: HKOC_1319314
- Positioned domains: PAS_4 78-191 ; PAS_9 213-315 ; HisKA 333-393 ; HATPase_c 438-539
Cluster members and taxonomy
Representative gene: GCF_029094545#PQ478_RS03360
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 79 885 · GCF_029094545
AssemblyASM2909454v1 · Complete Genomereference genome · haploid
Genome composition4 239 319 bp · 40,0% GCAlkalihalophilus pseudofirmus
Signal transduction countsGenes 64 · HK 33 · RR 31CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusAlkalihalophilus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Alkalihalophilus
Related genes
Preview from the same derived genome key