1 Response_reg#1
4-114 aa · 111 aa · 55.8% of protein
Raw token
Response_reg:4:1.13e-22:114:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PQ478_RS02385
Response regulator NarL family
Alkalihalophilus pseudofirmus · GCF_029094545
ClassRRTypeNarLLength199 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_029094545#PQ478_RS02385Stable P2CS identifier used across views.
GenomeGCF_029094545Bacteria; Bacillati; Bacillota; Bacilli; Bacillales; Bacillaceae; Alkalihalophilus
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length199 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage169 / 199 aa (84.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa199 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
135-192 aa · 58 aa · 29.1% of protein
Raw token
HTH_LUXR:135:1.19e-19:192:58:58- Raw architecture: Response_reg:4:1.13e-22:114:113:111#HTH_LUXR:135:1.19e-19:192:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_029094545::NZ_CP117835.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span452911-454642Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPQ478_02385RefSeq proteinWP_289235715.1
Context group ID
GCF_029094545::NZ_CP117835.1::G00004Context members
PQ478_RS02380PQ478_RS02385
Partner locus tags
PQ478_RS02380PQ478_RS02385
Partner old locus tags
PQ478_02380PQ478_02385
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_289235715.1Primary protein accession used for annex mappings.
UniProt accessionA0AAJ2U3U6Primary UniProt accession resolved in the annex database.
UniProt IDA0AAJ2U3U6_ALKPSDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPQ478_RS02385Primary locus identifier stored in the genes table.
Old locus tagPQ478_02385Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP117835.1Sequence record reported by the local genomic context database.
Genomic interval454 043-454 642 nt600 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span452 911-454 642 ntGCF_029094545::NZ_CP117835.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_029094545::NZ_CP117835.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP117835.1All displayed genes belong to this local TCS context.
Neighborhood span452 911-454 642 nt1 732 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
452 911 nt454 642 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PQ478_RS02380GCF_029094545#PQ478_RS02380
HKClassic
452 911-454 041 nt · Forward (+)
PQ478_RS02385GCF_029094545#PQ478_RS02385
RRNarLCurrent focus
454 043-454 642 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_029094545#PQ478_RS02385The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2146993
Simplified PFAM architecture for RROC_2146993
PFAM domain coverage: 164 / 199 aa (82.4%)
1 aa199 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[4-113] | GerE[137-190]
- Domain count: 2
- Matched identifier: RROC_2146993
- Positioned domains: Response_reg 4-113 ; GerE 137-190
Cluster members and taxonomy
Representative gene: GCF_029094545#PQ478_RS02385
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 79 885 · GCF_029094545
AssemblyASM2909454v1 · Complete Genomereference genome · haploid
Genome composition4 239 319 bp · 40,0% GCAlkalihalophilus pseudofirmus
Signal transduction countsGenes 64 · HK 33 · RR 31CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusAlkalihalophilus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Alkalihalophilus
Related genes
Preview from the same derived genome key