1 HisKA#1
209-267 aa · 59 aa · 13.6% of protein
Raw token
HisKA:209:0.00000000000000893:267:59:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PQ478_RS02615
Histidine kinase, Classic
Alkalihalophilus pseudofirmus · GCF_029094545
ClassHKTypeClassicLength434 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_029094545#PQ478_RS02615Stable P2CS identifier used across views.
GenomeGCF_029094545Bacteria; Bacillati; Bacillota; Bacilli; Bacillales; Bacillaceae; Alkalihalophilus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length434 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage166 / 434 aa (38.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa434 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
312-418 aa · 107 aa · 24.7% of protein
Raw token
HATPase_c:312:1.94e-25:418:110:109- Raw architecture: HisKA:209:0.00000000000000893:267:59:64#HATPase_c:312:1.94e-25:418:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_029094545::NZ_CP117835.1::G00006
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span506168-507472Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPQ478_02615RefSeq proteinWP_289235753.1
Context group ID
GCF_029094545::NZ_CP117835.1::G00006Context members
PQ478_RS02615
Partner locus tags
PQ478_RS02615
Partner old locus tags
PQ478_02615
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_289235753.1Primary protein accession used for annex mappings.
UniProt accessionA0AAJ2NQI9Primary UniProt accession resolved in the annex database.
UniProt IDA0AAJ2NQI9_ALKPSDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPQ478_RS02615Primary locus identifier stored in the genes table.
Old locus tagPQ478_02615Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP117835.1Sequence record reported by the local genomic context database.
Genomic interval506 168-507 472 nt1 305 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span506 168-507 472 ntGCF_029094545::NZ_CP117835.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_029094545::NZ_CP117835.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP117835.1All displayed genes belong to this local TCS context.
Neighborhood span506 168-507 472 nt1 305 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
506 168 nt507 472 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
PQ478_RS02615GCF_029094545#PQ478_RS02615
HKClassicCurrent focus
506 168-507 472 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_029094545#PQ478_RS02615The current gene is the representative for this cluster.
PFAM architecture5TM-5TMR_LYT + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2135686
Simplified PFAM architecture for HKOC_2135686
PFAM domain coverage: 287 / 434 aa (66.1%)
1 aa434 aa
5TM-5TMR_LYTHisKAHATPase_c
- Simplified architecture: 5TM-5TMR_LYT + HisKA + HATPase_c
- Raw architecture: 5TM-5TMR_LYT[34-156] | HisKA[209-267] | HATPase_c[313-417]
- Domain count: 3
- Matched identifier: HKOC_2135686
- Positioned domains: 5TM-5TMR_LYT 34-156 ; HisKA 209-267 ; HATPase_c 313-417
Cluster members and taxonomy
Representative gene: GCF_029094545#PQ478_RS02615
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 79 885 · GCF_029094545
AssemblyASM2909454v1 · Complete Genomereference genome · haploid
Genome composition4 239 319 bp · 40,0% GCAlkalihalophilus pseudofirmus
Signal transduction countsGenes 64 · HK 33 · RR 31CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusAlkalihalophilus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Alkalihalophilus
Related genes
Preview from the same derived genome key