1 Response_reg#1
8-123 aa · 116 aa · 48.9% of protein
Raw token
Response_reg:8:1.12e-23:123:116:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PQ478_RS01665
Response regulator, unclassified
Alkalihalophilus pseudofirmus · GCF_029094545
ClassRRTypeunclassifiedLength237 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_029094545#PQ478_RS01665Stable P2CS identifier used across views.
GenomeGCF_029094545Bacteria; Bacillati; Bacillota; Bacilli; Bacillales; Bacillaceae; Alkalihalophilus
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length237 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage116 / 237 aa (48.9%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa237 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:8:1.12e-23:123:116:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_029094545::NZ_CP117835.1::G00002
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span301165-301878Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPQ478_01665RefSeq proteinWP_289235613.1
Context group ID
GCF_029094545::NZ_CP117835.1::G00002Context members
PQ478_RS01665
Partner locus tags
PQ478_RS01665
Partner old locus tags
PQ478_01665
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_289235613.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPQ478_RS01665Primary locus identifier stored in the genes table.
Old locus tagPQ478_01665Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP117835.1Sequence record reported by the local genomic context database.
Genomic interval301 165-301 878 nt714 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span301 165-301 878 ntGCF_029094545::NZ_CP117835.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_029094545::NZ_CP117835.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP117835.1All displayed genes belong to this local TCS context.
Neighborhood span301 165-301 878 nt714 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
301 165 nt301 878 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
PQ478_RS01665GCF_029094545#PQ478_RS01665
RRunclassifiedCurrent focus
301 165-301 878 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_029094545#PQ478_RS01665The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_642 domains in the representative PFAM annotation.
PFAM architecture for RROC_0977899
Simplified PFAM architecture for RROC_0977899
PFAM domain coverage: 163 / 237 aa (68.8%)
1 aa237 aa
Response_regHTH_64
- Simplified architecture: Response_reg + HTH_64
- Raw architecture: Response_reg[8-122] | HTH_64[188-235]
- Domain count: 2
- Matched identifier: RROC_0977899
- Positioned domains: Response_reg 8-122 ; HTH_64 188-235
Cluster members and taxonomy
Representative gene: GCF_029094545#PQ478_RS01665
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 79 885 · GCF_029094545
AssemblyASM2909454v1 · Complete Genomereference genome · haploid
Genome composition4 239 319 bp · 40,0% GCAlkalihalophilus pseudofirmus
Signal transduction countsGenes 64 · HK 33 · RR 31CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusAlkalihalophilus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Alkalihalophilus
Related genes
Preview from the same derived genome key