1 Response_reg#1
4-113 aa · 110 aa · 48.7% of protein
Raw token
Response_reg:4:1.58e-23:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PQ478_RS02285
Response regulator OmpR family
Alkalihalophilus pseudofirmus · GCF_029094545
ClassRRTypeOmpRLength226 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_029094545#PQ478_RS02285Stable P2CS identifier used across views.
GenomeGCF_029094545Bacteria; Bacillati; Bacillota; Bacilli; Bacillales; Bacillaceae; Alkalihalophilus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length226 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage182 / 226 aa (80.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa226 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
151-222 aa · 72 aa · 31.9% of protein
Raw token
Trans_reg_C:151:3.55e-25:222:73:77- Raw architecture: Response_reg:4:1.58e-23:113:111:111#Trans_reg_C:151:3.55e-25:222:73:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_029094545::NZ_CP117835.1::G00003
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span434874-435554Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPQ478_02285RefSeq proteinWP_012957418.1
Context group ID
GCF_029094545::NZ_CP117835.1::G00003Context members
PQ478_RS02285
Partner locus tags
PQ478_RS02285
Partner old locus tags
PQ478_02285
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_012957418.1Primary protein accession used for annex mappings.
UniProt accessionD3FTH9Primary UniProt accession resolved in the annex database.
UniProt IDD3FTH9_ALKPODisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPQ478_RS02285Primary locus identifier stored in the genes table.
Old locus tagPQ478_02285Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP117835.1Sequence record reported by the local genomic context database.
Genomic interval434 874-435 554 nt681 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span434 874-435 554 ntGCF_029094545::NZ_CP117835.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_029094545::NZ_CP117835.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP117835.1All displayed genes belong to this local TCS context.
Neighborhood span434 874-435 554 nt681 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
434 874 nt435 554 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
PQ478_RS02285GCF_029094545#PQ478_RS02285
RROmpRCurrent focus
434 874-435 554 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000005825#BPOF4_RS02175Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1407943
Simplified PFAM architecture for RROC_1407943
PFAM domain coverage: 182 / 226 aa (80.5%)
1 aa226 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[151-222]
- Domain count: 2
- Matched identifier: RROC_1407943
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 151-222 ; Trans_reg_C 151-222
Cluster members and taxonomy
Representative gene: GCF_000005825#BPOF4_RS02175
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 79 885 · GCF_029094545
AssemblyASM2909454v1 · Complete Genomereference genome · haploid
Genome composition4 239 319 bp · 40,0% GCAlkalihalophilus pseudofirmus
Signal transduction countsGenes 64 · HK 33 · RR 31CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusAlkalihalophilus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Alkalihalophilus
Related genes
Preview from the same derived genome key