1 Response_reg#1
4-113 aa · 110 aa · 49.5% of protein
Raw token
Response_reg:4:4.57e-27:113:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NE546_RS03120
Response regulator OmpR family
Neglectibacter timonensis · GCF_024460865
ClassRRTypeOmpRLength222 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_024460865#NE546_RS03120Stable P2CS identifier used across views.
GenomeGCF_024460865Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Neglectibacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length222 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 222 aa (83.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa222 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
145-219 aa · 75 aa · 33.8% of protein
Raw token
Trans_reg_C:145:4.16e-20:219:77:77- Raw architecture: Response_reg:4:4.57e-27:113:110:111#Trans_reg_C:145:4.16e-20:219:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_024460865::NZ_JANFZG010000004.1::G00036
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span152535-153203Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNE546_03120RefSeq proteinWP_066868101.1
Context group ID
GCF_024460865::NZ_JANFZG010000004.1::G00036Context members
NE546_RS03120
Partner locus tags
NE546_RS03120
Partner old locus tags
NE546_03120
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_066868101.1Primary protein accession used for annex mappings.
UniProt accessionA0ABT1RVQ6Primary UniProt accession resolved in the annex database.
UniProt IDA0ABT1RVQ6_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNE546_RS03120Primary locus identifier stored in the genes table.
Old locus tagNE546_03120Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANFZG010000004.1Sequence record reported by the local genomic context database.
Genomic interval152 535-153 203 nt669 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span152 535-153 203 ntGCF_024460865::NZ_JANFZG010000004.1::G00036
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024460865::NZ_JANFZG010000004.1::G00036Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANFZG010000004.1All displayed genes belong to this local TCS context.
Neighborhood span152 535-153 203 nt669 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
152 535 nt153 203 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
NE546_RS03120GCF_024460865#NE546_RS03120
RROmpRCurrent focus
152 535-153 203 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_024460865#NE546_RS03120The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1658493
Simplified PFAM architecture for RROC_1658493
PFAM domain coverage: 184 / 222 aa (82.9%)
1 aa222 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[145-219]
- Domain count: 2
- Matched identifier: RROC_1658493
- Positioned domains: Response_reg 4-112 ; Trans_reg_C 145-219
Cluster members and taxonomy
Representative gene: GCF_024460865#NE546_RS03120
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 776 382 · GCF_024460865
AssemblyASM2446086v1 · Contighaploid
Genome composition4 030 546 bp · 52,5% GCNeglectibacter timonensis
Signal transduction countsGenes 113 · HK 57 · RR 53CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusNeglectibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Neglectibacter
Related genes
Preview from the same derived genome key