1 Response_reg#1
5-113 aa · 109 aa · 45.2% of protein
Raw token
Response_reg:5:5.03e-36:113:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NE546_RS01610
Response regulator OmpR family
Neglectibacter timonensis · GCF_024460865
ClassRRTypeOmpRLength241 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_024460865#NE546_RS01610Stable P2CS identifier used across views.
GenomeGCF_024460865Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Neglectibacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length241 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 241 aa (77.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa241 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
150-226 aa · 77 aa · 32.0% of protein
Raw token
Trans_reg_C:150:1.1e-36:226:77:77- Raw architecture: Response_reg:5:5.03e-36:113:110:111#Trans_reg_C:150:1.1e-36:226:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_024460865::NZ_JANFZG010000002.1::G00023
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span176916-179139Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNE546_01610RefSeq proteinWP_066863482.1
Context group ID
GCF_024460865::NZ_JANFZG010000002.1::G00023Context members
NE546_RS01605NE546_RS01610
Partner locus tags
NE546_RS01605NE546_RS01610
Partner old locus tags
NE546_01605NE546_01610
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_066863482.1Primary protein accession used for annex mappings.
UniProt accessionA0ABT1RUY9Primary UniProt accession resolved in the annex database.
UniProt IDA0ABT1RUY9_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNE546_RS01610Primary locus identifier stored in the genes table.
Old locus tagNE546_01610Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANFZG010000002.1Sequence record reported by the local genomic context database.
Genomic interval178 414-179 139 nt726 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span176 916-179 139 ntGCF_024460865::NZ_JANFZG010000002.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024460865::NZ_JANFZG010000002.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANFZG010000002.1All displayed genes belong to this local TCS context.
Neighborhood span176 916-179 139 nt2 224 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
176 916 nt179 139 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
NE546_RS01605GCF_024460865#NE546_RS01605
HKClassic
176 916-178 427 nt · Reverse (-)
NE546_RS01610GCF_024460865#NE546_RS01610
RROmpRCurrent focus
178 414-179 139 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_024460865#NE546_RS01610The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0873640
Simplified PFAM architecture for RROC_0873640
PFAM domain coverage: 186 / 241 aa (77.2%)
1 aa241 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[150-226]
- Domain count: 2
- Matched identifier: RROC_0873640
- Positioned domains: Response_reg 5-113 ; Trans_reg_C 150-226
Cluster members and taxonomy
Representative gene: GCF_024460865#NE546_RS01610
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 776 382 · GCF_024460865
AssemblyASM2446086v1 · Contighaploid
Genome composition4 030 546 bp · 52,5% GCNeglectibacter timonensis
Signal transduction countsGenes 113 · HK 57 · RR 53CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusNeglectibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Neglectibacter
Related genes
Preview from the same derived genome key