1 Response_reg#1
3-116 aa · 114 aa · 27.1% of protein
Raw token
Response_reg:3:1.29e-22:116:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NE546_RS01240
Response regulator, unclassified
Neglectibacter timonensis · GCF_024460865
ClassRRTypeunclassifiedLength421 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_024460865#NE546_RS01240Stable P2CS identifier used across views.
GenomeGCF_024460865Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Neglectibacter
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length421 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage152 / 421 aa (36.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa421 aa
Domain-by-domain annotation2 items
2 HTH_AraC#2
384-421 aa · 38 aa · 9.0% of protein
Raw token
HTH_AraC:384:0.00000000129:421:38:42- Raw architecture: Response_reg:3:1.29e-22:116:114:111#HTH_AraC:384:0.00000000129:421:38:42
- Domain description: 1 Response_reg,1 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_024460865::NZ_JANFZG010000002.1::G00019
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span78902-81788Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNE546_01240RefSeq proteinWP_256191431.1
Context group ID
GCF_024460865::NZ_JANFZG010000002.1::G00019Context members
NE546_RS01235NE546_RS01240
Partner locus tags
NE546_RS01235NE546_RS01240
Partner old locus tags
NE546_01235NE546_01240
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_256191431.1Primary protein accession used for annex mappings.
UniProt accessionA0ABT1RUN0Primary UniProt accession resolved in the annex database.
UniProt IDA0ABT1RUN0_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNE546_RS01240Primary locus identifier stored in the genes table.
Old locus tagNE546_01240Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANFZG010000002.1Sequence record reported by the local genomic context database.
Genomic interval80 523-81 788 nt1 266 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span78 902-81 788 ntGCF_024460865::NZ_JANFZG010000002.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024460865::NZ_JANFZG010000002.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANFZG010000002.1All displayed genes belong to this local TCS context.
Neighborhood span78 902-81 788 nt2 887 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
78 902 nt81 788 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
NE546_RS01235GCF_024460865#NE546_RS01235
HKClassic
78 902-80 545 nt · Forward (+)
NE546_RS01240GCF_024460865#NE546_RS01240
RRunclassifiedCurrent focus
80 523-81 788 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_024460865#NE546_RS01240The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0355299
Simplified PFAM architecture for RROC_0355299
PFAM domain coverage: 191 / 421 aa (45.4%)
1 aa421 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[3-115] | HTH_18[344-421]
- Domain count: 2
- Matched identifier: RROC_0355299
- Positioned domains: Response_reg 3-115 ; HTH_18 344-421
Cluster members and taxonomy
Representative gene: GCF_024460865#NE546_RS01240
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 776 382 · GCF_024460865
AssemblyASM2446086v1 · Contighaploid
Genome composition4 030 546 bp · 52,5% GCNeglectibacter timonensis
Signal transduction countsGenes 113 · HK 57 · RR 53CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusNeglectibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Neglectibacter
Related genes
Preview from the same derived genome key