1 Response_reg#1
3-116 aa · 114 aa · 21.8% of protein
Raw token
Response_reg:3:1.41e-23:116:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NE546_RS01135
Response regulator, unclassified
Neglectibacter timonensis · GCF_024460865
ClassRRTypeunclassifiedLength522 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_024460865#NE546_RS01135Stable P2CS identifier used across views.
GenomeGCF_024460865Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Neglectibacter
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length522 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage194 / 522 aa (37.2%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa522 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
426-467 aa · 42 aa · 8.0% of protein
Raw token
HTH_AraC:426:0.00000642:467:42:423 HTH_AraC#3
480-517 aa · 38 aa · 7.3% of protein
Raw token
HTH_AraC:480:0.00000000579:517:38:42- Raw architecture: Response_reg:3:1.41e-23:116:114:111#HTH_AraC:426:0.00000642:467:42:42#HTH_AraC:480:0.00000000579:517:38:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_024460865::NZ_JANFZG010000002.1::G00018
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span52726-54294Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNE546_01135RefSeq proteinWP_066863719.1
Context group ID
GCF_024460865::NZ_JANFZG010000002.1::G00018Context members
NE546_RS01135
Partner locus tags
NE546_RS01135
Partner old locus tags
NE546_01135
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_066863719.1Primary protein accession used for annex mappings.
UniProt accessionA0ABT1RUK0Primary UniProt accession resolved in the annex database.
UniProt IDA0ABT1RUK0_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNE546_RS01135Primary locus identifier stored in the genes table.
Old locus tagNE546_01135Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANFZG010000002.1Sequence record reported by the local genomic context database.
Genomic interval52 726-54 294 nt1 569 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span52 726-54 294 ntGCF_024460865::NZ_JANFZG010000002.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024460865::NZ_JANFZG010000002.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANFZG010000002.1All displayed genes belong to this local TCS context.
Neighborhood span52 726-54 294 nt1 569 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
52 726 nt54 294 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
NE546_RS01135GCF_024460865#NE546_RS01135
RRunclassifiedCurrent focus
52 726-54 294 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_024460865#NE546_RS01135The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0123801
Simplified PFAM architecture for RROC_0123801
PFAM domain coverage: 192 / 522 aa (36.8%)
1 aa522 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[3-115] | HTH_18[439-517]
- Domain count: 2
- Matched identifier: RROC_0123801
- Positioned domains: Response_reg 3-115 ; HTH_18 439-517
Cluster members and taxonomy
Representative gene: GCF_024460865#NE546_RS01135
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 776 382 · GCF_024460865
AssemblyASM2446086v1 · Contighaploid
Genome composition4 030 546 bp · 52,5% GCNeglectibacter timonensis
Signal transduction countsGenes 113 · HK 57 · RR 53CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusNeglectibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Neglectibacter
Related genes
Preview from the same derived genome key