1 dCache_1#1
33-214 aa · 182 aa · 32.1% of protein
Raw token
dCache_1:33:0.000000837:214:182:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NE546_RS01740
Histidine kinase, Classic
Neglectibacter timonensis · GCF_024460865
ClassHKTypeClassicLength567 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_024460865#NE546_RS01740Stable P2CS identifier used across views.
GenomeGCF_024460865Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Neglectibacter
Domain signature
Compact overview inferred from the domain field
dCache_1HAMPHis_kinaseHATPase_c
Protein length567 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage445 / 567 aa (78.5%)Merged over positioned domains only.
Domain description1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa567 aa
Domain-by-domain annotation4 items
2 HAMP#2
260-329 aa · 70 aa · 12.3% of protein
Raw token
HAMP:260:0.000000775:329:70:693 His_kinase#3
353-429 aa · 77 aa · 13.6% of protein
Raw token
His_kinase:353:4.84e-21:429:78:804 HATPase_c#4
441-556 aa · 116 aa · 20.5% of protein
Raw token
HATPase_c:441:0.0000074:556:117:109- Raw architecture: dCache_1:33:0.000000837:214:182:195#HAMP:260:0.000000775:329:70:69#His_kinase:353:4.84e-21:429:78:80#HATPase_c:441:0.0000074:556:117:109
- Domain description: 1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_024460865::NZ_JANFZG010000003.1::G00029
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span23608-26063Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNE546_01735RefSeq proteinWP_256191811.1
Context group ID
GCF_024460865::NZ_JANFZG010000003.1::G00029Context members
NE546_RS01740NE546_RS01745
Partner locus tags
NE546_RS01740NE546_RS01745
Partner old locus tags
NE546_01735NE546_01740
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_256191811.1Primary protein accession used for annex mappings.
UniProt accessionA0ABT1RZN8Primary UniProt accession resolved in the annex database.
UniProt IDA0ABT1RZN8_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNE546_RS01740Primary locus identifier stored in the genes table.
Old locus tagNE546_01735Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANFZG010000003.1Sequence record reported by the local genomic context database.
Genomic interval23 608-25 311 nt1 704 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span23 608-26 063 ntGCF_024460865::NZ_JANFZG010000003.1::G00029
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024460865::NZ_JANFZG010000003.1::G00029Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANFZG010000003.1All displayed genes belong to this local TCS context.
Neighborhood span23 608-26 063 nt2 456 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
23 608 nt26 063 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
NE546_RS01740GCF_024460865#NE546_RS01740
HKClassicCurrent focus
23 608-25 311 nt · Reverse (-)
NE546_RS01745GCF_024460865#NE546_RS01745
RRunclassified
25 308-26 063 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_024460865#NE546_RS01740The current gene is the representative for this cluster.
PFAM architectureHis_kinase1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_1227325
Simplified PFAM architecture for HKOC_1227325
PFAM domain coverage: 76 / 567 aa (13.4%)
1 aa567 aa
His_kinase
- Simplified architecture: His_kinase
- Raw architecture: His_kinase[353-428]
- Domain count: 1
- Matched identifier: HKOC_1227325
- Positioned domains: His_kinase 353-428
Cluster members and taxonomy
Representative gene: GCF_024460865#NE546_RS01740
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 776 382 · GCF_024460865
AssemblyASM2446086v1 · Contighaploid
Genome composition4 030 546 bp · 52,5% GCNeglectibacter timonensis
Signal transduction countsGenes 113 · HK 57 · RR 53CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusNeglectibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Neglectibacter
Related genes
Preview from the same derived genome key