1 Response_reg#1
4-120 aa · 117 aa · 47.6% of protein
Raw token
Response_reg:4:8.08e-20:120:119:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NE546_RS01295
Response regulator LytTR family
Neglectibacter timonensis · GCF_024460865
ClassRRTypeLytTRLength246 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_024460865#NE546_RS01295Stable P2CS identifier used across views.
GenomeGCF_024460865Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Neglectibacter
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length246 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage209 / 246 aa (85.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa246 aa
Domain-by-domain annotation2 items
2 LytTR#2
144-235 aa · 92 aa · 37.4% of protein
Raw token
LytTR:144:0.000000000648:235:97:98- Raw architecture: Response_reg:4:8.08e-20:120:119:111#LytTR:144:0.000000000648:235:97:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_024460865::NZ_JANFZG010000002.1::G00020
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span99677-100417Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNE546_01295RefSeq proteinWP_066863637.1
Context group ID
GCF_024460865::NZ_JANFZG010000002.1::G00020Context members
NE546_RS01295
Partner locus tags
NE546_RS01295
Partner old locus tags
NE546_01295
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_066863637.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNE546_RS01295Primary locus identifier stored in the genes table.
Old locus tagNE546_01295Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANFZG010000002.1Sequence record reported by the local genomic context database.
Genomic interval99 677-100 417 nt741 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span99 677-100 417 ntGCF_024460865::NZ_JANFZG010000002.1::G00020
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024460865::NZ_JANFZG010000002.1::G00020Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANFZG010000002.1All displayed genes belong to this local TCS context.
Neighborhood span99 677-100 417 nt741 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
99 677 nt100 417 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
NE546_RS01295GCF_024460865#NE546_RS01295
RRLytTRCurrent focus
99 677-100 417 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_024460865#NE546_RS01295The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0780275
Simplified PFAM architecture for RROC_0780275
PFAM domain coverage: 193 / 246 aa (78.5%)
1 aa246 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[17-119] | LytTR[144-233]
- Domain count: 2
- Matched identifier: RROC_0780275
- Positioned domains: Response_reg 17-119 ; LytTR 144-233
Cluster members and taxonomy
Representative gene: GCF_024460865#NE546_RS01295
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 776 382 · GCF_024460865
AssemblyASM2446086v1 · Contighaploid
Genome composition4 030 546 bp · 52,5% GCNeglectibacter timonensis
Signal transduction countsGenes 113 · HK 57 · RR 53CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusNeglectibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Neglectibacter
Related genes
Preview from the same derived genome key