1 His_kinase#1
365-440 aa · 76 aa · 12.9% of protein
Raw token
His_kinase:365:6.73e-21:440:76:80P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NE546_RS01110
Histidine kinase, Classic
Neglectibacter timonensis · GCF_024460865
ClassHKTypeClassicLength590 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_024460865#NE546_RS01110Stable P2CS identifier used across views.
GenomeGCF_024460865Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Neglectibacter
Domain signature
Compact overview inferred from the domain field
His_kinaseHATPase_c
Protein length590 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage181 / 590 aa (30.7%)Merged over positioned domains only.
Domain description1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa590 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
467-571 aa · 105 aa · 17.8% of protein
Raw token
HATPase_c:467:0.000000000599:571:105:109- Raw architecture: His_kinase:365:6.73e-21:440:76:80#HATPase_c:467:0.000000000599:571:105:109
- Domain description: 1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_024460865::NZ_JANFZG010000002.1::G00017
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span45723-47495Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNE546_01110RefSeq proteinWP_256191430.1
Context group ID
GCF_024460865::NZ_JANFZG010000002.1::G00017Context members
NE546_RS01110
Partner locus tags
NE546_RS01110
Partner old locus tags
NE546_01110
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_256191430.1Primary protein accession used for annex mappings.
UniProt accessionA0ABT1RUM4Primary UniProt accession resolved in the annex database.
UniProt IDA0ABT1RUM4_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNE546_RS01110Primary locus identifier stored in the genes table.
Old locus tagNE546_01110Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANFZG010000002.1Sequence record reported by the local genomic context database.
Genomic interval45 723-47 495 nt1 773 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span45 723-47 495 ntGCF_024460865::NZ_JANFZG010000002.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024460865::NZ_JANFZG010000002.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANFZG010000002.1All displayed genes belong to this local TCS context.
Neighborhood span45 723-47 495 nt1 773 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
45 723 nt47 495 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
NE546_RS01110GCF_024460865#NE546_RS01110
HKClassicCurrent focus
45 723-47 495 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_024460865#NE546_RS01110The current gene is the representative for this cluster.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1112837
Simplified PFAM architecture for HKOC_1112837
PFAM domain coverage: 183 / 590 aa (31.0%)
1 aa590 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[366-441] | HATPase_c[464-570]
- Domain count: 2
- Matched identifier: HKOC_1112837
- Positioned domains: His_kinase 366-441 ; HATPase_c 464-570
Cluster members and taxonomy
Representative gene: GCF_024460865#NE546_RS01110
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 776 382 · GCF_024460865
AssemblyASM2446086v1 · Contighaploid
Genome composition4 030 546 bp · 52,5% GCNeglectibacter timonensis
Signal transduction countsGenes 113 · HK 57 · RR 53CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusNeglectibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Neglectibacter
Related genes
Preview from the same derived genome key