1 Response_reg#1
4-117 aa · 114 aa · 21.9% of protein
Raw token
Response_reg:4:6.96e-35:117:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NE546_RS00990
Response regulator, unclassified
Neglectibacter timonensis · GCF_024460865
ClassRRTypeunclassifiedLength520 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_024460865#NE546_RS00990Stable P2CS identifier used across views.
GenomeGCF_024460865Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Neglectibacter
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length520 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage189 / 520 aa (36.3%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa520 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
421-461 aa · 41 aa · 7.9% of protein
Raw token
HTH_AraC:421:0.0000000205:461:41:423 HTH_AraC#3
478-511 aa · 34 aa · 6.5% of protein
Raw token
HTH_AraC:478:0.0000475:511:34:42- Raw architecture: Response_reg:4:6.96e-35:117:114:111#HTH_AraC:421:0.0000000205:461:41:42#HTH_AraC:478:0.0000475:511:34:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_024460865::NZ_JANFZG010000002.1::G00016
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span13603-16945Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNE546_00990RefSeq proteinWP_066863791.1
Context group ID
GCF_024460865::NZ_JANFZG010000002.1::G00016Context members
NE546_RS19085NE546_RS00990
Partner locus tags
NE546_RS19085NE546_RS00990
Partner old locus tags
NE546_00985NE546_00990
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_066863791.1Primary protein accession used for annex mappings.
UniProt accessionA0ABT1RUG9Primary UniProt accession resolved in the annex database.
UniProt IDA0ABT1RUG9_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNE546_RS00990Primary locus identifier stored in the genes table.
Old locus tagNE546_00990Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANFZG010000002.1Sequence record reported by the local genomic context database.
Genomic interval15 383-16 945 nt1 563 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span13 603-16 945 ntGCF_024460865::NZ_JANFZG010000002.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024460865::NZ_JANFZG010000002.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANFZG010000002.1All displayed genes belong to this local TCS context.
Neighborhood span13 603-16 945 nt3 343 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
13 603 nt16 945 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
NE546_RS19085GCF_024460865#NE546_RS19085
HKClassic
13 603-15 381 nt · Forward (+)
NE546_RS00990GCF_024460865#NE546_RS00990
RRunclassifiedCurrent focus
15 383-16 945 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_024460865#NE546_RS00990The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0126675
Simplified PFAM architecture for RROC_0126675
PFAM domain coverage: 194 / 520 aa (37.3%)
1 aa520 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-117] | HTH_18[433-512]
- Domain count: 2
- Matched identifier: RROC_0126675
- Positioned domains: Response_reg 4-117 ; HTH_18 433-512
Cluster members and taxonomy
Representative gene: GCF_024460865#NE546_RS00990
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 776 382 · GCF_024460865
AssemblyASM2446086v1 · Contighaploid
Genome composition4 030 546 bp · 52,5% GCNeglectibacter timonensis
Signal transduction countsGenes 113 · HK 57 · RR 53CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusNeglectibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Neglectibacter
Related genes
Preview from the same derived genome key