1 HisKA#1
198-263 aa · 66 aa · 15.4% of protein
Raw token
HisKA:198:0.00000000000000356:263:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIQ24_RS00615
Histidine kinase, Classic
Blautia faecis · GCF_020537665
ClassHKTypeClassicLength428 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020537665#LIQ24_RS00615Stable P2CS identifier used across views.
GenomeGCF_020537665Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length428 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage181 / 428 aa (42.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa428 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
308-422 aa · 115 aa · 26.9% of protein
Raw token
HATPase_c:308:2.07e-18:422:116:109- Raw architecture: HisKA:198:0.00000000000000356:263:66:64#HATPase_c:308:2.07e-18:422:116:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020537665::NZ_JAJBMY010000001.1::G00008
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span146545-148507Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIQ24_00615RefSeq proteinWP_226854182.1
Context group ID
GCF_020537665::NZ_JAJBMY010000001.1::G00008Context members
LIQ24_RS00615LIQ24_RS00620
Partner locus tags
LIQ24_RS00615LIQ24_RS00620
Partner old locus tags
LIQ24_00615LIQ24_00620
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_226854182.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIQ24_RS00615Primary locus identifier stored in the genes table.
Old locus tagLIQ24_00615Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJBMY010000001.1Sequence record reported by the local genomic context database.
Genomic interval146 545-147 831 nt1 287 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span146 545-148 507 ntGCF_020537665::NZ_JAJBMY010000001.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020537665::NZ_JAJBMY010000001.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJBMY010000001.1All displayed genes belong to this local TCS context.
Neighborhood span146 545-148 507 nt1 963 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
146 545 nt148 507 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LIQ24_RS00615GCF_020537665#LIQ24_RS00615
HKClassicCurrent focus
146 545-147 831 nt · Reverse (-)
LIQ24_RS00620GCF_020537665#LIQ24_RS00620
RROmpR
147 821-148 507 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020537665#LIQ24_RS00615The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2193693
Simplified PFAM architecture for HKOC_2193693
PFAM domain coverage: 177 / 428 aa (41.4%)
1 aa428 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[199-262] | HATPase_c[310-422]
- Domain count: 2
- Matched identifier: HKOC_2193693
- Positioned domains: HisKA 199-262 ; HATPase_c 310-422
Cluster members and taxonomy
Representative gene: GCF_020537665#LIQ24_RS00615
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 871 665 · GCF_020537665
AssemblyASM2053766v1 · Contighaploid
Genome composition4 798 446 bp · 42,5% GCBlautia faecis
Signal transduction countsGenes 166 · HK 83 · RR 80CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key