1 Response_reg#1
5-117 aa · 113 aa · 21.2% of protein
Raw token
Response_reg:5:3.45e-29:117:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIQ24_RS00435
Response regulator, unclassified
Blautia faecis · GCF_020537665
ClassRRTypeunclassifiedLength534 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_020537665#LIQ24_RS00435Stable P2CS identifier used across views.
GenomeGCF_020537665Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length534 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage190 / 534 aa (35.6%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa534 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
440-480 aa · 41 aa · 7.7% of protein
Raw token
HTH_AraC:440:0.00000233:480:41:423 HTH_AraC#3
494-529 aa · 36 aa · 6.7% of protein
Raw token
HTH_AraC:494:0.000000235:529:36:42- Raw architecture: Response_reg:5:3.45e-29:117:113:111#HTH_AraC:440:0.00000233:480:41:42#HTH_AraC:494:0.000000235:529:36:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_020537665::NZ_JAJBMY010000001.1::G00004
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span87990-89594Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIQ24_00435RefSeq proteinWP_118577731.1
Context group ID
GCF_020537665::NZ_JAJBMY010000001.1::G00004Context members
LIQ24_RS00435
Partner locus tags
LIQ24_RS00435
Partner old locus tags
LIQ24_00435
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_118577731.1Primary protein accession used for annex mappings.
UniProt accessionA0ABX2H247Primary UniProt accession resolved in the annex database.
UniProt IDA0ABX2H247_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIQ24_RS00435Primary locus identifier stored in the genes table.
Old locus tagLIQ24_00435Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJBMY010000001.1Sequence record reported by the local genomic context database.
Genomic interval87 990-89 594 nt1 605 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span87 990-89 594 ntGCF_020537665::NZ_JAJBMY010000001.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020537665::NZ_JAJBMY010000001.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJBMY010000001.1All displayed genes belong to this local TCS context.
Neighborhood span87 990-89 594 nt1 605 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
87 990 nt89 594 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
LIQ24_RS00435GCF_020537665#LIQ24_RS00435
RRunclassifiedCurrent focus
87 990-89 594 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003480145#DW904_RS01195Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0103653
Simplified PFAM architecture for RROC_0103653
PFAM domain coverage: 190 / 534 aa (35.6%)
1 aa534 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[5-116] | HTH_18[453-530]
- Domain count: 2
- Matched identifier: RROC_0103653
- Positioned domains: Response_reg 5-116 ; Response_reg 5-116 ; HTH_18 453-530 ; HTH_18 453-530
Cluster members and taxonomy
Representative gene: GCF_003480145#DW904_RS01195
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 871 665 · GCF_020537665
AssemblyASM2053766v1 · Contighaploid
Genome composition4 798 446 bp · 42,5% GCBlautia faecis
Signal transduction countsGenes 166 · HK 83 · RR 80CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key