1 dCache_1#1
57-291 aa · 235 aa · 39.2% of protein
Raw token
dCache_1:57:0.00000314:291:235:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIQ24_RS00340
Histidine kinase, Classic
Blautia faecis · GCF_020537665
ClassHKTypeClassicLength600 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020537665#LIQ24_RS00340Stable P2CS identifier used across views.
GenomeGCF_020537665Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
dCache_1HAMPHis_kinaseHATPase_c
Protein length600 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage471 / 600 aa (78.5%)Merged over positioned domains only.
Domain description1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa600 aa
Domain-by-domain annotation4 items
2 HAMP#2
311-374 aa · 64 aa · 10.7% of protein
Raw token
HAMP:311:0.0000000000153:374:64:693 His_kinase#3
394-470 aa · 77 aa · 12.8% of protein
Raw token
His_kinase:394:5.1e-27:470:77:804 HATPase_c#4
489-583 aa · 95 aa · 15.8% of protein
Raw token
HATPase_c:489:0.000000000051:583:109:109- Raw architecture: dCache_1:57:0.00000314:291:235:195#HAMP:311:0.0000000000153:374:64:69#His_kinase:394:5.1e-27:470:77:80#HATPase_c:489:0.000000000051:583:109:109
- Domain description: 1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020537665::NZ_JAJBMY010000001.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span60896-63914Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIQ24_00340RefSeq proteinWP_226854159.1
Context group ID
GCF_020537665::NZ_JAJBMY010000001.1::G00003Context members
LIQ24_RS00335LIQ24_RS00340
Partner locus tags
LIQ24_RS00335LIQ24_RS00340
Partner old locus tags
LIQ24_00335LIQ24_00340
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_226854159.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIQ24_RS00340Primary locus identifier stored in the genes table.
Old locus tagLIQ24_00340Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJBMY010000001.1Sequence record reported by the local genomic context database.
Genomic interval62 112-63 914 nt1 803 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span60 896-63 914 ntGCF_020537665::NZ_JAJBMY010000001.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020537665::NZ_JAJBMY010000001.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJBMY010000001.1All displayed genes belong to this local TCS context.
Neighborhood span60 896-63 914 nt3 019 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
60 896 nt63 914 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LIQ24_RS00335GCF_020537665#LIQ24_RS00335
RRunclassified
60 896-62 140 nt · Reverse (-)
LIQ24_RS00340GCF_020537665#LIQ24_RS00340
HKClassicCurrent focus
62 112-63 914 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020537665#LIQ24_RS00340The current gene is the representative for this cluster.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1055060
Simplified PFAM architecture for HKOC_1055060
PFAM domain coverage: 218 / 600 aa (36.3%)
1 aa600 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[328-374] | His_kinase[394-471] | HATPase_c[492-584]
- Domain count: 3
- Matched identifier: HKOC_1055060
- Positioned domains: HAMP 328-374 ; His_kinase 394-471 ; HATPase_c 492-584
Cluster members and taxonomy
Representative gene: GCF_020537665#LIQ24_RS00340
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 871 665 · GCF_020537665
AssemblyASM2053766v1 · Contighaploid
Genome composition4 798 446 bp · 42,5% GCBlautia faecis
Signal transduction countsGenes 166 · HK 83 · RR 80CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key