1 HAMP#1
88-156 aa · 69 aa · 17.1% of protein
Raw token
HAMP:88:0.0000000000000295:156:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIQ24_RS00330
Histidine kinase, Classic
Blautia faecis · GCF_020537665
ClassHKTypeClassicLength403 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020537665#LIQ24_RS00330Stable P2CS identifier used across views.
GenomeGCF_020537665Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length403 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage248 / 403 aa (61.5%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa403 aa
Domain-by-domain annotation3 items
2 HisKA#2
163-228 aa · 66 aa · 16.4% of protein
Raw token
HisKA:163:0.000000000000207:228:66:643 HATPase_c#3
290-402 aa · 113 aa · 28.0% of protein
Raw token
HATPase_c:290:1.09e-31:402:113:109- Raw architecture: HAMP:88:0.0000000000000295:156:69:69#HisKA:163:0.000000000000207:228:66:64#HATPase_c:290:1.09e-31:402:113:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020537665::NZ_JAJBMY010000001.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span58945-60827Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIQ24_00330RefSeq proteinWP_226854157.1
Context group ID
GCF_020537665::NZ_JAJBMY010000001.1::G00002Context members
LIQ24_RS00325LIQ24_RS00330
Partner locus tags
LIQ24_RS00325LIQ24_RS00330
Partner old locus tags
LIQ24_00325LIQ24_00330
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_226854157.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIQ24_RS00330Primary locus identifier stored in the genes table.
Old locus tagLIQ24_00330Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJBMY010000001.1Sequence record reported by the local genomic context database.
Genomic interval59 616-60 827 nt1 212 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span58 945-60 827 ntGCF_020537665::NZ_JAJBMY010000001.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020537665::NZ_JAJBMY010000001.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJBMY010000001.1All displayed genes belong to this local TCS context.
Neighborhood span58 945-60 827 nt1 883 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
58 945 nt60 827 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LIQ24_RS00325GCF_020537665#LIQ24_RS00325
RROmpR
58 945-59 619 nt · Forward (+)
LIQ24_RS00330GCF_020537665#LIQ24_RS00330
HKClassicCurrent focus
59 616-60 827 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020537665#LIQ24_RS00330The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2418155
Simplified PFAM architecture for HKOC_2418155
PFAM domain coverage: 225 / 403 aa (55.8%)
1 aa403 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[105-156] | HisKA[163-226] | HATPase_c[293-401]
- Domain count: 3
- Matched identifier: HKOC_2418155
- Positioned domains: HAMP 105-156 ; HisKA 163-226 ; HATPase_c 293-401
Cluster members and taxonomy
Representative gene: GCF_020537665#LIQ24_RS00330
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 871 665 · GCF_020537665
AssemblyASM2053766v1 · Contighaploid
Genome composition4 798 446 bp · 42,5% GCBlautia faecis
Signal transduction countsGenes 166 · HK 83 · RR 80CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key