1 GGDEF#1
199-346 aa · 148 aa · 14.1% of protein
Raw token
GGDEF:199:3.11e-19:346:157:160P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIQ24_RS00250
Histidine kinase, Hybrid
Blautia faecis · GCF_020537665
ClassHKTypeHybridLength1048 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_020537665#LIQ24_RS00250Stable P2CS identifier used across views.
GenomeGCF_020537665Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
GGDEFHisKAHATPase_cResponse_reg
Protein length1048 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage449 / 1048 aa (42.8%)Merged over positioned domains only.
Domain description1 GGDEF,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa1048 aa
Domain-by-domain annotation4 items
2 HisKA#2
673-739 aa · 67 aa · 6.4% of protein
Raw token
HisKA:673:0.00000000000000426:739:67:643 HATPase_c#3
788-905 aa · 118 aa · 11.3% of protein
Raw token
HATPase_c:788:2.11e-27:905:118:1094 Response_reg#4
927-1042 aa · 116 aa · 11.1% of protein
Raw token
Response_reg:927:1.3e-27:1042:116:111- Raw architecture: GGDEF:199:3.11e-19:346:157:160#HisKA:673:0.00000000000000426:739:67:64#HATPase_c:788:2.11e-27:905:118:109#Response_reg:927:1.3e-27:1042:116:111
- Domain description: 1 GGDEF,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_020537665::NZ_JAJBMY010000001.1::G00001
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span43769-46915Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIQ24_00250RefSeq proteinWP_226854148.1
Context group ID
GCF_020537665::NZ_JAJBMY010000001.1::G00001Context members
LIQ24_RS00250
Partner locus tags
LIQ24_RS00250
Partner old locus tags
LIQ24_00250
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_226854148.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIQ24_RS00250Primary locus identifier stored in the genes table.
Old locus tagLIQ24_00250Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJBMY010000001.1Sequence record reported by the local genomic context database.
Genomic interval43 769-46 915 nt3 147 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span43 769-46 915 ntGCF_020537665::NZ_JAJBMY010000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020537665::NZ_JAJBMY010000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJBMY010000001.1All displayed genes belong to this local TCS context.
Neighborhood span43 769-46 915 nt3 147 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
43 769 nt46 915 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
LIQ24_RS00250GCF_020537665#LIQ24_RS00250
HKHybridCurrent focus
43 769-46 915 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020537665#LIQ24_RS00250The current gene is the representative for this cluster.
PFAM architectureGGDEF + HisKA + HATPase_c + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0261114
Simplified PFAM architecture for HKOC_0261114
PFAM domain coverage: 446 / 1048 aa (42.6%)
1 aa1048 aa
GGDEFHisKAHATPase_cResponse_reg
- Simplified architecture: GGDEF + HisKA + HATPase_c + Response_reg
- Raw architecture: GGDEF[200-347] | HisKA[673-739] | HATPase_c[790-904] | Response_reg[927-1042]
- Domain count: 4
- Matched identifier: HKOC_0261114
- Positioned domains: GGDEF 200-347 ; HisKA 673-739 ; HATPase_c 790-904 ; Response_reg 927-1042
Cluster members and taxonomy
Representative gene: GCF_020537665#LIQ24_RS00250
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 871 665 · GCF_020537665
AssemblyASM2053766v1 · Contighaploid
Genome composition4 798 446 bp · 42,5% GCBlautia faecis
Signal transduction countsGenes 166 · HK 83 · RR 80CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key